Variant report

Variant	rs7852730
Chromosome Location	chr9:12855132-12855133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16923068	1.00[EUR][1000 genomes]
rs16929728	1.00[EUR][1000 genomes]
rs16929797	1.00[EUR][1000 genomes]
rs7853482	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7867037	0.85[AFR][1000 genomes]
rs7869939	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892573	chr9:12730636-12874703	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12850400-12859200	Weak transcription	Small Intestine	intestine
2	chr9:12850600-12859000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:12851000-12858400	Weak transcription	Stomach Mucosa	stomach
4	chr9:12851400-12856200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:12851800-12867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:12854200-12855400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:12854200-12855400	Enhancers	HMEC	breast
8	chr9:12854200-12855600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:12854600-12855200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:12854600-12855400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:12854600-12855600	Enhancers	Adipose Nuclei	Adipose
12	chr9:12854600-12859200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:12854800-12855400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:12854800-12855600	Enhancers	NHEK	skin
15	chr9:12854800-12859400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:12854800-12859400	Weak transcription	Fetal Intestine Large	intestine
17	chr9:12854800-12860000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:12855000-12855400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:12855000-12859200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links