Variant report

Variant	rs7869939
Chromosome Location	chr9:12859622-12859623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:12776291..12778540-chr9:12858744..12861808,3	MCF-7	breast:
2	chr9:12783262..12785196-chr9:12857512..12860310,2	MCF-7	breast:
3	chr9:12849521..12851462-chr9:12857711..12860176,2	MCF-7	breast:
4	chr9:12851201..12854512-chr9:12857301..12860029,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7852730	0.85[AFR][1000 genomes]
rs7853482	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892573	chr9:12730636-12874703	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12851800-12867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:12854800-12860000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:12856800-12860000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:12857000-12859800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:12857000-12862400	Weak transcription	Fetal Kidney	kidney
6	chr9:12857200-12859800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:12857200-12860000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:12857200-12862800	Weak transcription	Fetal Lung	lung
9	chr9:12858800-12861200	Enhancers	NHEK	skin
10	chr9:12859000-12859800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:12859000-12859800	Enhancers	Stomach Mucosa	stomach
12	chr9:12859000-12860000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:12859000-12860000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:12859200-12859800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:12859200-12859800	Flanking Active TSS	HMEC	breast
16	chr9:12859200-12860000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:12859200-12860600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:12859200-12861200	Enhancers	NHDF-Ad	bronchial
19	chr9:12859200-12864600	Enhancers	Fetal Intestine Small	intestine
20	chr9:12859400-12859800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:12859400-12860000	Flanking Active TSS	Hela-S3	cervix
22	chr9:12859400-12860400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr9:12859400-12860400	Flanking Active TSS	A549	lung
24	chr9:12859400-12860400	Enhancers	HSMM	muscle
25	chr9:12859400-12860400	Flanking Active TSS	Osteobl	bone
26	chr9:12859400-12864400	Enhancers	Fetal Intestine Large	intestine
27	chr9:12859600-12859800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr9:12859600-12860200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:12859600-12860200	Enhancers	Adipose Nuclei	Adipose
30	chr9:12859600-12860200	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr9:12859600-12860200	Active TSS	NH-A	brain
32	chr9:12859600-12860600	Enhancers	HUVEC	blood vessel
33	chr9:12859600-12860800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:12859600-12864000	Weak transcription	Small Intestine	intestine

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