Variant report

Variant	rs2382461
Chromosome Location	chr9:14251243-14251244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14239275..14240780-chr9:14249848..14252251,2	MCF-7	breast:
2	chr15:65588766..65591318-chr9:14248852..14251417,2	MCF-7	breast:
3	chr9:14250809..14252545-chr9:14321944..14323813,2	MCF-7	breast:
4	chr9:14251090..14252086-chr9:14261627..14262408,2	MCF-7	breast:
5	chr9:14249968..14256064-chr9:14312661..14317512,12	MCF-7	breast:
6	chr9:14250972..14252069-chr9:14406629..14407235,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction
ENSG00000225472	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3761667	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14246400-14251400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14246400-14251400	Weak transcription	Lung	lung
3	chr9:14246600-14251400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:14246600-14251400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:14246600-14256600	Weak transcription	Gastric	stomach
6	chr9:14247600-14251400	Weak transcription	Spleen	Spleen
7	chr9:14247600-14251600	Weak transcription	Esophagus	oesophagus
8	chr9:14247800-14251400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:14248800-14251600	Weak transcription	Pancreas	Pancrea
10	chr9:14249000-14253600	Enhancers	Fetal Heart	heart
11	chr9:14249400-14252000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:14249600-14251400	Enhancers	Adipose Nuclei	Adipose
13	chr9:14249600-14251600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:14249800-14251800	Enhancers	Psoas Muscle	Psoas
15	chr9:14249800-14251800	Enhancers	Small Intestine	intestine
16	chr9:14249800-14252000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:14249800-14252200	Enhancers	Fetal Intestine Small	intestine
18	chr9:14249800-14252200	Enhancers	Stomach Mucosa	stomach
19	chr9:14249800-14252400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:14249800-14252400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:14249800-14253800	Enhancers	HUVEC	blood vessel
22	chr9:14250000-14251400	Enhancers	Rectal Smooth Muscle	rectum
23	chr9:14250000-14252200	Enhancers	Fetal Intestine Large	intestine
24	chr9:14250200-14251400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:14250200-14251600	Enhancers	Liver	Liver
26	chr9:14250200-14252000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:14250400-14251400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:14250400-14251400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:14250400-14251400	Enhancers	Brain Germinal Matrix	brain
30	chr9:14250400-14251400	Enhancers	NHLF	lung
31	chr9:14250400-14251800	Enhancers	Left Ventricle	heart
32	chr9:14250400-14252000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:14250600-14251400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:14250600-14251400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:14250600-14251600	Weak transcription	Aorta	Aorta
36	chr9:14250800-14252200	Flanking Active TSS	A549	lung
37	chr9:14251000-14251400	Enhancers	Brain Cingulate Gyrus	brain
38	chr9:14251000-14251600	Enhancers	Duodenum Mucosa	Duodenum
39	chr9:14251000-14251600	Enhancers	HSMMtube	muscle
40	chr9:14251000-14251800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:14251000-14251800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:14251000-14251800	Enhancers	Fetal Kidney	kidney
43	chr9:14251000-14252000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:14251000-14252000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:14251000-14252000	Flanking Active TSS	Fetal Lung	lung
46	chr9:14251000-14252000	Enhancers	Fetal Muscle Leg	muscle
47	chr9:14251000-14252000	Enhancers	Placenta	Placenta
48	chr9:14251000-14252000	Flanking Active TSS	HMEC	breast
49	chr9:14251000-14252000	Flanking Active TSS	Osteobl	bone
50	chr9:14251000-14252200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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