Variant report

Variant	rs3761667
Chromosome Location	chr9:14250603-14250604
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14239275..14240780-chr9:14249848..14252251,2	MCF-7	breast:
2	chr15:65588766..65591318-chr9:14248852..14251417,2	MCF-7	breast:
3	chr9:14249968..14256064-chr9:14312661..14317512,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction
ENSG00000225472	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10435726	0.92[JPT][hapmap]
rs2382461	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14239800-14251200	Weak transcription	Hela-S3	cervix
2	chr9:14241400-14251000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:14241400-14251000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:14241400-14251200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:14244000-14251000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:14244000-14251200	Weak transcription	Fetal Brain Male	brain
7	chr9:14246400-14251200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:14246400-14251200	Weak transcription	Ovary	ovary
9	chr9:14246400-14251400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:14246400-14251400	Weak transcription	Lung	lung
11	chr9:14246600-14251000	Weak transcription	HSMMtube	muscle
12	chr9:14246600-14251400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:14246600-14251400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:14246600-14256600	Weak transcription	Gastric	stomach
15	chr9:14247600-14251000	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:14247600-14251200	Weak transcription	Brain Anterior Caudate	brain
17	chr9:14247600-14251200	Weak transcription	Right Atrium	heart
18	chr9:14247600-14251200	Weak transcription	Right Ventricle	heart
19	chr9:14247600-14251200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:14247600-14251400	Weak transcription	Spleen	Spleen
21	chr9:14247600-14251600	Weak transcription	Esophagus	oesophagus
22	chr9:14247800-14250800	Weak transcription	Brain Substantia Nigra	brain
23	chr9:14247800-14250800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:14247800-14251000	Enhancers	Fetal Lung	lung
25	chr9:14247800-14251200	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:14247800-14251200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:14247800-14251400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:14248800-14251200	Weak transcription	Fetal Stomach	stomach
29	chr9:14248800-14251600	Weak transcription	Pancreas	Pancrea
30	chr9:14249000-14253600	Enhancers	Fetal Heart	heart
31	chr9:14249200-14250800	Enhancers	A549	lung
32	chr9:14249400-14251200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:14249400-14251200	Enhancers	NH-A	brain
34	chr9:14249400-14252000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:14249600-14251000	Enhancers	Osteobl	bone
36	chr9:14249600-14251200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:14249600-14251200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:14249600-14251400	Enhancers	Adipose Nuclei	Adipose
39	chr9:14249600-14251600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr9:14249800-14251000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:14249800-14251000	Enhancers	HMEC	breast
42	chr9:14249800-14251200	Weak transcription	Brain Angular Gyrus	brain
43	chr9:14249800-14251200	Enhancers	NHEK	skin
44	chr9:14249800-14251800	Enhancers	Psoas Muscle	Psoas
45	chr9:14249800-14251800	Enhancers	Small Intestine	intestine
46	chr9:14249800-14252000	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr9:14249800-14252200	Enhancers	Fetal Intestine Small	intestine
48	chr9:14249800-14252200	Enhancers	Stomach Mucosa	stomach
49	chr9:14249800-14252400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:14249800-14252400	Enhancers	Skeletal Muscle Female	skeletal muscle

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