Variant report
| Variant | rs2382689 |
|---|---|
| Chromosome Location | chr7:103097457-103097458 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1004245 | 1.00[ASN][1000 genomes] |
| rs10239626 | 0.88[AFR][1000 genomes] |
| rs10268858 | 0.88[AFR][1000 genomes] |
| rs1859785 | 0.81[AFR][1000 genomes] |
| rs1990167 | 0.88[AFR][1000 genomes] |
| rs2041005 | 0.86[AFR][1000 genomes] |
| rs2108265 | 0.88[AFR][1000 genomes] |
| rs2190419 | 0.98[ASN][1000 genomes] |
| rs2214924 | 0.81[AFR][1000 genomes] |
| rs2382691 | 0.88[AFR][1000 genomes] |
| rs2382692 | 0.88[AFR][1000 genomes] |
| rs2382693 | 0.98[ASN][1000 genomes] |
| rs2382694 | 0.97[ASN][1000 genomes] |
| rs2906639 | 0.98[ASN][1000 genomes] |
| rs2965086 | 1.00[ASN][1000 genomes] |
| rs6465921 | 0.88[AFR][1000 genomes] |
| rs6465922 | 0.97[ASN][1000 genomes] |
| rs6465925 | 0.99[ASN][1000 genomes] |
| rs6945055 | 1.00[ASN][1000 genomes] |
| rs6950571 | 0.88[AFR][1000 genomes] |
| rs6953562 | 1.00[ASN][1000 genomes] |
| rs6954159 | 1.00[ASN][1000 genomes] |
| rs6957350 | 0.88[AFR][1000 genomes] |
| rs6960052 | 0.84[AFR][1000 genomes] |
| rs6979981 | 0.81[AFR][1000 genomes] |
| rs6980118 | 0.85[AFR][1000 genomes] |
| rs735459 | 0.89[ASN][1000 genomes] |
| rs7781140 | 0.88[AFR][1000 genomes] |
| rs7786063 | 0.88[AFR][1000 genomes] |
| rs7786141 | 0.88[AFR][1000 genomes] |
| rs7790690 | 0.88[AFR][1000 genomes] |
| rs7798857 | 0.93[ASN][1000 genomes] |
| rs7802470 | 0.87[ASN][1000 genomes] |
| rs9918713 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103094400-103097800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
