Variant report
| Variant | rs735459 |
|---|---|
| Chromosome Location | chr7:103064806-103064807 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103064365..103066783-chr7:103071791..103075668,4 | K562 | blood: | |
| 2 | chr7:103060391..103062412-chr7:103064074..103067234,3 | K562 | blood: | |
| 3 | chr7:103064368..103066846-chr7:103068610..103071577,2 | K562 | blood: | |
| 4 | chr7:102937571..102939280-chr7:103063812..103065320,2 | K562 | blood: | |
| 5 | chr12:120727150..120729921-chr7:103064420..103066581,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000105819 | Chromatin interaction |
| ENSG00000170615 | Chromatin interaction |
| ENSG00000251852 | Chromatin interaction |
| ENSG00000202538 | Chromatin interaction |
| ENSG00000252047 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1004245 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2190419 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2382689 | 0.89[ASN][1000 genomes] |
| rs2382693 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2382694 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2906639 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2965086 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6465922 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6465925 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6945055 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6953562 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6954159 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7798857 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7802470 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031750 | chr7:103031836-103067306 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103062600-103067000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
