Variant report

Variant	rs2383191
Chromosome Location	chr9:21443854-21443855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10811544	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10964996	0.90[AFR][1000 genomes]
rs10965003	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10965004	0.86[ASN][1000 genomes]
rs1332179	0.83[ASN][1000 genomes]
rs1815460	0.94[ASN][1000 genomes]
rs1819462	0.86[ASN][1000 genomes]
rs1888889	0.83[ASN][1000 genomes]
rs3861009	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4977725	0.88[ASN][1000 genomes]
rs6475535	0.92[ASN][1000 genomes]
rs7042410	0.81[AFR][1000 genomes]
rs7861480	0.82[ASN][1000 genomes]
rs7869107	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7869315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21443200-21444400	Enhancers	Primary B cells from cord blood	blood
2	chr9:21443600-21444000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr9:21443600-21444200	Enhancers	Primary T cells from cord blood	blood
4	chr9:21443600-21444200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:21443600-21444200	Enhancers	GM12878-XiMat	blood
6	chr9:21443600-21444200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:21443600-21445000	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:21443600-21445200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:21443600-21445200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:21443600-21445400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:21443800-21444000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:21443800-21444000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:21443800-21444200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:21443800-21444200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:21443800-21444600	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:21443800-21444800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:21443800-21444800	Enhancers	Fetal Thymus	thymus
18	chr9:21443800-21445000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr9:21443800-21445000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:21443800-21445000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:21443800-21445000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr9:21443800-21445200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:21443800-21445200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links