Variant report

Variant	rs2384103
Chromosome Location	chr10:54769225-54769226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10740530	1.00[EUR][1000 genomes]
rs11003304	1.00[EUR][1000 genomes]
rs11003337	1.00[EUR][1000 genomes]
rs12262963	1.00[EUR][1000 genomes]
rs12263217	0.84[AFR][1000 genomes]
rs12265781	1.00[EUR][1000 genomes]
rs1807867	1.00[EUR][1000 genomes]
rs2245103	1.00[EUR][1000 genomes]
rs2248681	1.00[EUR][1000 genomes]
rs2249478	1.00[EUR][1000 genomes]
rs4460726	1.00[EUR][1000 genomes]
rs57035391	1.00[EUR][1000 genomes]
rs57584034	1.00[EUR][1000 genomes]
rs58403582	1.00[EUR][1000 genomes]
rs59511693	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61677526	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1826571	chr10:54765608-54788821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895405	chr10:54765608-54824741	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54764400-54771200	Enhancers	HepG2	liver
2	chr10:54765200-54782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:54766800-54770000	Weak transcription	Stomach Mucosa	stomach
4	chr10:54767400-54769600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:54767600-54770000	Weak transcription	Fetal Lung	lung
6	chr10:54767600-54770200	Weak transcription	Liver	Liver
7	chr10:54767600-54782200	Weak transcription	Fetal Kidney	kidney
8	chr10:54769200-54772600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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