Variant report

Variant	rs2385119
Chromosome Location	chr19:38115841-38115842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10402671	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10409605	0.82[ASN][1000 genomes]
rs10417576	0.82[ASN][1000 genomes]
rs1531549	0.82[ASN][1000 genomes]
rs16958861	0.82[ASN][1000 genomes]
rs16958863	0.82[ASN][1000 genomes]
rs1975937	0.82[ASN][1000 genomes]
rs2016598	0.81[EUR][1000 genomes]
rs2909085	0.80[ASN][1000 genomes]
rs2909102	0.80[ASN][1000 genomes]
rs2909105	0.80[ASN][1000 genomes]
rs2909109	0.80[ASN][1000 genomes]
rs2927739	0.82[ASN][1000 genomes]
rs2927740	0.81[ASN][1000 genomes]
rs2927746	0.80[ASN][1000 genomes]
rs2927747	0.80[ASN][1000 genomes]
rs2972446	0.82[ASN][1000 genomes]
rs2972447	0.82[ASN][1000 genomes]
rs2972458	0.82[ASN][1000 genomes]
rs3101747	0.81[ASN][1000 genomes]
rs35863684	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8103647	0.81[ASN][1000 genomes]
rs9749368	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2385119	AC012309.5	cis	Heart Left Ventricle	GTEx
rs2385119	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs2385119	ZNF585B	cis	Artery Tibial	GTEx
rs2385119	AC012309.5	cis	Thyroid	GTEx
rs2385119	AC012309.5	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38105000-38116000	Weak transcription	Right Ventricle	heart
2	chr19:38114600-38116600	ZNF genes & repeats	Liver	Liver
3	chr19:38115400-38116800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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