The 2.0 version of rSNPBase

Variant report

Variant rs1531549
Chromosome Location chr19:38088009-38088010
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38086400-38093400 Weak transcription Gastric stomach
2 chr19:38086400-38095600 Weak transcription Fetal Muscle Trunk muscle
3 chr19:38086400-38095600 Weak transcription Stomach Mucosa stomach
4 chr19:38086600-38088400 Weak transcription Lung lung
5 chr19:38086600-38089000 Weak transcription Left Ventricle heart
6 chr19:38086600-38089400 Weak transcription Thymus Thymus
7 chr19:38086600-38089600 Weak transcription Pancreas Pancrea
8 chr19:38086600-38089800 Weak transcription Osteobl bone
9 chr19:38086600-38090400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr19:38086600-38090800 Weak transcription Psoas Muscle Psoas
11 chr19:38086600-38091800 Weak transcription Esophagus oesophagus
12 chr19:38086600-38092000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr19:38086600-38092200 Weak transcription Small Intestine intestine
14 chr19:38086600-38092800 Weak transcription Fetal Muscle Leg muscle
15 chr19:38086600-38098200 Weak transcription Colonic Mucosa Colon
16 chr19:38086600-38098800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr19:38086600-38099400 Weak transcription Fetal Stomach stomach
18 chr19:38086600-38103200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr19:38086800-38089200 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr19:38086800-38090400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr19:38086800-38090400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr19:38086800-38090600 Weak transcription Primary hematopoietic stem cells blood
23 chr19:38086800-38090800 Weak transcription Fetal Intestine Large intestine
24 chr19:38086800-38091800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr19:38086800-38092000 Weak transcription Fetal Lung lung
26 chr19:38086800-38094000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr19:38086800-38095600 Weak transcription Fetal Kidney kidney
28 chr19:38087200-38088200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
29 chr19:38087200-38088800 Weak transcription Primary B cells from peripheral blood blood
30 chr19:38087200-38088800 Weak transcription Primary T cells from cord blood blood
31 chr19:38087200-38088800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr19:38087200-38089000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr19:38087200-38089200 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr19:38087200-38089200 Weak transcription Brain Substantia Nigra brain
35 chr19:38087200-38089400 Weak transcription Adipose Nuclei Adipose
36 chr19:38087200-38089400 Weak transcription Colon Smooth Muscle Colon
37 chr19:38087200-38089400 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr19:38087200-38089400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr19:38087200-38090400 Weak transcription Duodenum Mucosa Duodenum
40 chr19:38087200-38090600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr19:38087200-38091800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr19:38087200-38093200 Weak transcription Fetal Intestine Small intestine
43 chr19:38087200-38099400 Weak transcription Rectal Smooth Muscle rectum
44 chr19:38087200-38100200 Weak transcription Right Ventricle heart
45 chr19:38087200-38103000 Weak transcription Placenta Amnion Placenta Amnion
46 chr19:38087400-38088200 Weak transcription Aorta Aorta
47 chr19:38087400-38088400 Enhancers Primary T killer memory cells from peripheral blood blood
48 chr19:38087400-38088800 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr19:38087400-38088800 Weak transcription Primary T cells fromperipheralblood blood
50 chr19:38087400-38089000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015