Variant report

Variant	rs1974714
Chromosome Location	chr19:38206461-38206462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10048511	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10402671	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10409402	0.83[ASN][1000 genomes]
rs10409487	0.83[ASN][1000 genomes]
rs10409605	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10417576	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10420746	0.87[ASN][1000 genomes]
rs11083432	0.86[EUR][1000 genomes]
rs11673023	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1291	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12974225	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12979640	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531549	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16958861	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16958863	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs171376	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1975937	0.80[ASN][1000 genomes]
rs2075284	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2287229	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241932	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241933	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs241950	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2909085	0.89[ASN][1000 genomes]
rs2909088	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2909093	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2909098	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2909100	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2909102	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2909105	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2909109	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2927739	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2927740	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2927742	0.82[ASN][1000 genomes]
rs2927746	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2927747	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972430	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972434	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972437	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972438	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972439	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972445	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972446	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2972447	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2972448	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2972452	0.81[ASN][1000 genomes]
rs2972458	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3095724	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3095726	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101746	0.82[ASN][1000 genomes]
rs3101747	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3112433	0.84[ASN][1000 genomes]
rs3112434	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35863684	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4803509	0.83[ASN][1000 genomes]
rs56151076	0.88[ASN][1000 genomes]
rs6508742	0.90[ASN][1000 genomes]
rs8103633	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8103647	0.81[EUR][1000 genomes]
rs8112706	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs856300	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs856304	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9304569	0.90[ASN][1000 genomes]
rs958305	0.88[EUR][1000 genomes]
rs968073	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9749368	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38183200-38208800	Weak transcription	Fetal Heart	heart
2	chr19:38184400-38208800	Weak transcription	HepG2	liver
3	chr19:38187000-38207800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:38187000-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:38187400-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:38188200-38209200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:38189400-38209200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr19:38190000-38206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr19:38190600-38209000	Weak transcription	Brain Substantia Nigra	brain
10	chr19:38190600-38209200	Weak transcription	HSMMtube	muscle
11	chr19:38190800-38209000	Weak transcription	Stomach Mucosa	stomach
12	chr19:38190800-38209200	Weak transcription	Fetal Thymus	thymus
13	chr19:38190800-38209200	Weak transcription	Psoas Muscle	Psoas
14	chr19:38191200-38209200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:38191200-38209200	Weak transcription	Colon Smooth Muscle	Colon
16	chr19:38193800-38209000	Weak transcription	Hela-S3	cervix
17	chr19:38194600-38206600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:38197600-38208800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr19:38198800-38208800	Weak transcription	Fetal Brain Male	brain
20	chr19:38198800-38209000	Weak transcription	Spleen	Spleen
21	chr19:38198800-38209200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr19:38198800-38209200	Weak transcription	Gastric	stomach
23	chr19:38198800-38209400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:38198800-38209800	Weak transcription	Esophagus	oesophagus
25	chr19:38199000-38209000	Weak transcription	Fetal Kidney	kidney
26	chr19:38199000-38209000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr19:38199000-38209200	Weak transcription	Pancreas	Pancrea
28	chr19:38199000-38209200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr19:38199000-38209400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr19:38199000-38209400	Weak transcription	HSMM	muscle
31	chr19:38199600-38209000	Weak transcription	Small Intestine	intestine
32	chr19:38200400-38209000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr19:38200400-38209000	Weak transcription	Brain Anterior Caudate	brain
34	chr19:38200400-38209200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr19:38200400-38209200	Weak transcription	NHDF-Ad	bronchial
36	chr19:38200400-38209400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr19:38200600-38209400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr19:38200800-38206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:38200800-38208800	Weak transcription	Fetal Brain Female	brain
40	chr19:38200800-38209000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr19:38200800-38209200	Weak transcription	Brain Hippocampus Middle	brain
42	chr19:38200800-38209200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr19:38201200-38209200	Weak transcription	Thymus	Thymus
44	chr19:38201400-38208800	Weak transcription	Brain Germinal Matrix	brain
45	chr19:38201400-38209200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr19:38202000-38209200	Weak transcription	Colonic Mucosa	Colon
47	chr19:38202400-38209000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr19:38202400-38209200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:38202400-38209200	Weak transcription	Osteobl	bone
50	chr19:38202600-38207400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links