Variant report

Variant	rs62108337
Chromosome Location	chr19:38185013-38185014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38145174..38146985-chr19:38184008..38186251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120784	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10402671	0.85[EUR][1000 genomes]
rs10409605	0.86[EUR][1000 genomes]
rs10417576	0.87[EUR][1000 genomes]
rs11083432	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12979640	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1531549	0.85[EUR][1000 genomes]
rs16958861	0.85[EUR][1000 genomes]
rs16958863	0.88[EUR][1000 genomes]
rs1975937	0.84[EUR][1000 genomes]
rs2075284	0.85[EUR][1000 genomes]
rs2287229	0.88[EUR][1000 genomes]
rs2909093	0.84[EUR][1000 genomes]
rs2909098	0.83[EUR][1000 genomes]
rs2909100	0.81[EUR][1000 genomes]
rs2909102	0.88[EUR][1000 genomes]
rs2909105	0.88[EUR][1000 genomes]
rs2927739	0.88[EUR][1000 genomes]
rs2927740	0.86[EUR][1000 genomes]
rs2927746	0.88[EUR][1000 genomes]
rs2927747	0.88[EUR][1000 genomes]
rs2972430	0.88[EUR][1000 genomes]
rs2972434	0.83[EUR][1000 genomes]
rs2972437	0.81[EUR][1000 genomes]
rs2972438	0.81[EUR][1000 genomes]
rs2972439	0.81[EUR][1000 genomes]
rs2972446	0.88[EUR][1000 genomes]
rs2972447	0.88[EUR][1000 genomes]
rs2972458	0.88[EUR][1000 genomes]
rs3101746	0.83[EUR][1000 genomes]
rs3101747	0.86[EUR][1000 genomes]
rs3112434	0.84[EUR][1000 genomes]
rs35863684	0.85[EUR][1000 genomes]
rs56151076	0.87[AFR][1000 genomes]
rs56317671	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7246461	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8103647	0.85[EUR][1000 genomes]
rs958305	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs968073	0.88[EUR][1000 genomes]
rs9749368	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38183200-38208800	Weak transcription	Fetal Heart	heart
2	chr19:38183400-38187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:38183400-38187400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:38183400-38187400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:38183400-38188800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:38183400-38190000	Weak transcription	Stomach Mucosa	stomach
7	chr19:38183600-38186400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr19:38183600-38187200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:38183600-38187200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:38183600-38187400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:38183600-38187400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:38183600-38187400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:38183600-38187400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr19:38183600-38187400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr19:38183600-38187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:38183600-38187400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr19:38183600-38187400	Weak transcription	Aorta	Aorta
18	chr19:38183600-38187400	Weak transcription	Brain Germinal Matrix	brain
19	chr19:38183600-38187400	Weak transcription	Fetal Intestine Large	intestine
20	chr19:38183600-38187400	Weak transcription	Fetal Intestine Small	intestine
21	chr19:38183600-38187400	Weak transcription	Fetal Muscle Leg	muscle
22	chr19:38183600-38187400	Weak transcription	Left Ventricle	heart
23	chr19:38183600-38187400	Weak transcription	Ovary	ovary
24	chr19:38183600-38187400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr19:38183600-38187400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr19:38183600-38187400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr19:38183600-38187400	Weak transcription	Right Ventricle	heart
28	chr19:38183600-38187400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr19:38183600-38187400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr19:38183600-38187400	Weak transcription	Spleen	Spleen
31	chr19:38183600-38187400	Weak transcription	NHLF	lung
32	chr19:38183600-38187600	Weak transcription	Primary T cells from cord blood	blood
33	chr19:38183600-38187600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:38183600-38187600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr19:38183600-38187800	Weak transcription	Primary B cells from cord blood	blood
36	chr19:38183600-38187800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr19:38183600-38188000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr19:38183600-38188800	Weak transcription	Fetal Kidney	kidney
39	chr19:38183600-38189400	Weak transcription	Psoas Muscle	Psoas
40	chr19:38183600-38190000	Weak transcription	Small Intestine	intestine
41	chr19:38183800-38187400	Weak transcription	Fetal Brain Female	brain
42	chr19:38183800-38187400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr19:38183800-38187600	Weak transcription	Placenta	Placenta
44	chr19:38183800-38187600	Weak transcription	Fetal Thymus	thymus
45	chr19:38184200-38187400	Weak transcription	Brain Anterior Caudate	brain
46	chr19:38184200-38187600	Weak transcription	HSMMtube	muscle
47	chr19:38184200-38187800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:38184200-38188600	Weak transcription	Fetal Brain Male	brain
49	chr19:38184200-38201200	Weak transcription	Colonic Mucosa	Colon
50	chr19:38184400-38187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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