Variant report

Variant	rs2387911
Chromosome Location	chr15:93260714-93260715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93191617..93195403-chr15:93257490..93261490,4	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1004309	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11854403	0.91[EUR][1000 genomes]
rs11854426	0.91[EUR][1000 genomes]
rs12439654	0.89[ASN][1000 genomes]
rs12440201	0.88[ASN][1000 genomes]
rs12440617	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12441089	0.82[EUR][1000 genomes]
rs12442362	0.88[ASN][1000 genomes]
rs12442555	0.89[ASN][1000 genomes]
rs12899027	0.90[EUR][1000 genomes]
rs12906973	0.83[ASN][1000 genomes]
rs1545143	0.90[EUR][1000 genomes]
rs1561304	0.88[ASN][1000 genomes]
rs17648050	0.86[ASN][1000 genomes]
rs1808818	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1971808	0.87[EUR][1000 genomes]
rs2018744	0.87[EUR][1000 genomes]
rs2278519	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278520	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278521	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2387913	0.87[EUR][1000 genomes]
rs2387914	0.86[EUR][1000 genomes]
rs2387915	0.92[EUR][1000 genomes]
rs34888918	0.90[EUR][1000 genomes]
rs34981968	0.90[EUR][1000 genomes]
rs35095971	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35244027	0.90[EUR][1000 genomes]
rs35257450	0.83[EUR][1000 genomes]
rs35663415	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35770033	0.90[EUR][1000 genomes]
rs35982819	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777734	0.92[EUR][1000 genomes]
rs4778033	0.84[ASN][1000 genomes]
rs4778034	0.90[EUR][1000 genomes]
rs57030748	0.88[EUR][1000 genomes]
rs58407306	0.90[EUR][1000 genomes]
rs58894958	0.82[ASN][1000 genomes]
rs60471977	0.92[EUR][1000 genomes]
rs6496972	0.85[EUR][1000 genomes]
rs6496973	0.92[EUR][1000 genomes]
rs6496974	0.92[EUR][1000 genomes]
rs6496975	0.92[EUR][1000 genomes]
rs6496976	0.92[EUR][1000 genomes]
rs6496977	0.90[EUR][1000 genomes]
rs6496978	0.92[EUR][1000 genomes]
rs6496979	0.91[EUR][1000 genomes]
rs6496982	0.90[EUR][1000 genomes]
rs6496985	0.88[EUR][1000 genomes]
rs66824972	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66899661	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67770259	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67971141	0.90[EUR][1000 genomes]
rs71462507	0.91[EUR][1000 genomes]
rs7162983	0.83[EUR][1000 genomes]
rs7165223	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7166307	0.90[EUR][1000 genomes]
rs7169147	0.81[EUR][1000 genomes]
rs7169452	0.91[EUR][1000 genomes]
rs7170733	0.92[EUR][1000 genomes]
rs7174515	0.91[EUR][1000 genomes]
rs7176732	0.90[EUR][1000 genomes]
rs7176911	0.89[EUR][1000 genomes]
rs7176935	0.91[EUR][1000 genomes]
rs7177028	0.91[EUR][1000 genomes]
rs7183236	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8025793	0.92[EUR][1000 genomes]
rs8028966	0.90[EUR][1000 genomes]
rs8029984	0.92[EUR][1000 genomes]
rs8032004	0.92[EUR][1000 genomes]
rs8033632	0.90[EUR][1000 genomes]
rs8033698	0.87[EUR][1000 genomes]
rs8039425	0.85[EUR][1000 genomes]
rs8039858	0.92[EUR][1000 genomes]
rs8041556	0.90[EUR][1000 genomes]
rs8042909	0.90[EUR][1000 genomes]
rs9806135	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93258200-93261000	Weak transcription	Right Atrium	heart
2	chr15:93258200-93277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:93258200-93277000	Weak transcription	Left Ventricle	heart
4	chr15:93258400-93277000	Weak transcription	Ovary	ovary
5	chr15:93258600-93277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:93258800-93262200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:93258800-93267400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:93258800-93277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:93258800-93277000	Weak transcription	Fetal Brain Male	brain
10	chr15:93259800-93260800	Weak transcription	Fetal Stomach	stomach
11	chr15:93260400-93264600	Weak transcription	Brain Substantia Nigra	brain

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