Variant report

Variant	rs34981968
Chromosome Location	chr15:93271601-93271602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93266734..93268295-chr15:93270737..93273507,2	K562	blood:

Variant related genes	Relation type
ENSG00000272298	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1004309	0.90[EUR][1000 genomes]
rs11854403	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11854426	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12440617	0.88[EUR][1000 genomes]
rs12441089	0.90[EUR][1000 genomes]
rs12442748	0.85[EUR][1000 genomes]
rs12899027	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1545143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1808818	0.88[EUR][1000 genomes]
rs1971808	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2018744	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2278519	0.89[EUR][1000 genomes]
rs2278520	0.90[EUR][1000 genomes]
rs2278521	0.90[EUR][1000 genomes]
rs2387911	0.90[EUR][1000 genomes]
rs2387913	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2387914	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2387915	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34888918	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35095971	0.86[EUR][1000 genomes]
rs35244027	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35257450	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35663415	0.88[EUR][1000 genomes]
rs35770033	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35982819	0.87[EUR][1000 genomes]
rs4777731	0.88[EUR][1000 genomes]
rs4777734	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4778034	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55642392	0.81[AMR][1000 genomes]
rs57030748	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58112352	0.80[EUR][1000 genomes]
rs58407306	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59048995	0.82[EUR][1000 genomes]
rs60471977	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6496972	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6496973	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6496974	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6496975	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6496976	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6496977	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6496978	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6496979	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6496982	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6496985	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66824972	0.88[EUR][1000 genomes]
rs66899661	0.88[EUR][1000 genomes]
rs67770259	0.88[EUR][1000 genomes]
rs67971141	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71462507	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7162983	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7163211	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7165223	0.84[EUR][1000 genomes]
rs7166307	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7169147	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7169452	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7170733	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7174515	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7174670	0.83[EUR][1000 genomes]
rs7176732	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7176911	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7176935	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7177028	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7183236	0.88[EUR][1000 genomes]
rs8025793	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8028966	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029984	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8032004	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8033632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8033698	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8039858	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8041556	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8042909	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs893376	0.83[EUR][1000 genomes]
rs9806135	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93258200-93277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93258200-93277000	Weak transcription	Left Ventricle	heart
3	chr15:93258400-93277000	Weak transcription	Ovary	ovary
4	chr15:93258600-93277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:93258800-93277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:93258800-93277000	Weak transcription	Fetal Brain Male	brain
7	chr15:93264400-93276600	Weak transcription	Fetal Kidney	kidney
8	chr15:93267600-93277000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:93267600-93277000	Weak transcription	Right Ventricle	heart
10	chr15:93270400-93272800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:93271200-93272200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:93271200-93272400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:93271600-93277000	Weak transcription	Colonic Mucosa	Colon

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