Variant report

Variant	rs7174670
Chromosome Location	chr15:93267597-93267598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:93267415-93267687	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93267015..93268960-chr15:93276120..93278418,2	K562	blood:

Variant related genes	Relation type
ENSG00000272298	TF binding region
ENSG00000258741	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11854403	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854426	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12899027	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1545143	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1971808	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2018744	0.82[AFR][1000 genomes]
rs2387913	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387914	0.85[ASN][1000 genomes]
rs2387915	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34888918	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34981968	0.83[EUR][1000 genomes]
rs35244027	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35257450	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35770033	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777734	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4778034	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55642392	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57030748	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58112352	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58407306	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59048995	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60471977	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6496972	0.81[EUR][1000 genomes]
rs6496973	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6496974	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6496975	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6496976	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6496977	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6496978	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6496979	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6496982	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6496985	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67971141	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71412569	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71462507	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7162983	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7165223	0.82[EUR][1000 genomes]
rs7166307	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169147	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7169452	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7170586	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170733	0.84[EUR][1000 genomes]
rs7174515	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7176732	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7176911	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7176935	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7177028	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8025793	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8028966	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8029984	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8032004	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8033632	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8033698	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8039858	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8041556	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8042909	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs893376	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9806135	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93258200-93277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93258200-93277000	Weak transcription	Left Ventricle	heart
3	chr15:93258400-93277000	Weak transcription	Ovary	ovary
4	chr15:93258600-93277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:93258800-93277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:93258800-93277000	Weak transcription	Fetal Brain Male	brain
7	chr15:93264400-93276600	Weak transcription	Fetal Kidney	kidney
8	chr15:93267000-93267600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr15:93267200-93267800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr15:93267200-93267800	Enhancers	Dnd41	blood
11	chr15:93267200-93267800	Enhancers	HepG2	liver
12	chr15:93267400-93267600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:93267400-93267600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:93267400-93267600	Weak transcription	Fetal Lung	lung
15	chr15:93267400-93267600	Enhancers	Right Ventricle	heart
16	chr15:93267400-93267800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr15:93267400-93267800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:93267400-93267800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:93267400-93267800	Enhancers	Thymus	Thymus

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