Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12870250	0.83[JPT][hapmap]
rs12870927	0.83[JPT][hapmap]
rs1467601	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17625129	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2078408	0.82[JPT][hapmap]
rs34053860	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3858738	0.84[JPT][hapmap]
rs4769768	0.82[JPT][hapmap]
rs6490422	0.83[JPT][hapmap]
rs7323986	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7324910	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7328052	0.89[ASN][1000 genomes]
rs7337296	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7991022	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9508533	0.82[JPT][hapmap]
rs9508538	0.82[JPT][hapmap]
rs9508539	0.80[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9508540	0.81[ASN][1000 genomes]
rs9551721	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs997896	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30295200-30297000	Enhancers	Spleen	Spleen
2	chr13:30296000-30296600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30296000-30297000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:30296200-30296800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:30296200-30297000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:30296400-30296800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:30296400-30297200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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