Variant report

Variant	rs7337296
Chromosome Location	chr13:30285120-30285121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30168624..30171119-chr13:30283452..30285208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1010154	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12854213	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12870250	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12870927	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1467601	0.95[ASN][1000 genomes]
rs1590696	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1752040	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17625129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2078408	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2388241	0.81[ASN][1000 genomes]
rs34053860	0.92[ASN][1000 genomes]
rs3858738	0.94[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4769767	0.87[ASN][1000 genomes]
rs4769768	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4769769	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6490421	0.83[ASN][1000 genomes]
rs6490422	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6490423	0.83[ASN][1000 genomes]
rs6490424	0.83[ASN][1000 genomes]
rs7317991	0.83[ASN][1000 genomes]
rs7318002	0.83[ASN][1000 genomes]
rs7323986	0.93[ASN][1000 genomes]
rs7324910	0.93[ASN][1000 genomes]
rs7333892	0.83[ASN][1000 genomes]
rs7991022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9508530	0.83[ASN][1000 genomes]
rs9508532	0.84[ASN][1000 genomes]
rs9508533	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9508534	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9508535	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9508536	0.87[ASN][1000 genomes]
rs9508537	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9508538	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9508539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs9508540	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508541	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9550489	0.87[ASN][1000 genomes]
rs9551721	0.97[ASN][1000 genomes]
rs9551722	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9579471	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9634355	0.87[ASN][1000 genomes]
rs997896	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30282600-30288400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:30282800-30288000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:30283200-30287400	Enhancers	Fetal Kidney	kidney
4	chr13:30283400-30286000	Enhancers	Fetal Brain Male	brain
5	chr13:30283600-30286400	Enhancers	Stomach Mucosa	stomach
6	chr13:30283800-30285200	Enhancers	Fetal Brain Female	brain
7	chr13:30283800-30286800	Enhancers	Duodenum Mucosa	Duodenum
8	chr13:30284200-30285400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:30284200-30286400	Enhancers	Fetal Intestine Small	intestine

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