Variant report
| Variant | rs6490421 |
|---|---|
| Chromosome Location | chr13:30264381-30264382 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1010154 | 0.92[ASN][1000 genomes] |
| rs12854213 | 0.92[ASN][1000 genomes] |
| rs12870250 | 0.94[ASN][1000 genomes] |
| rs12870927 | 0.94[ASN][1000 genomes] |
| rs1590696 | 0.94[ASN][1000 genomes] |
| rs1752040 | 0.94[ASN][1000 genomes] |
| rs17625129 | 0.81[ASN][1000 genomes] |
| rs2078408 | 0.97[ASN][1000 genomes] |
| rs3858738 | 0.98[ASN][1000 genomes] |
| rs4769767 | 0.94[ASN][1000 genomes] |
| rs4769768 | 0.94[ASN][1000 genomes] |
| rs4769769 | 0.91[ASN][1000 genomes] |
| rs6490422 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6490423 | 0.98[ASN][1000 genomes] |
| rs6490424 | 0.98[ASN][1000 genomes] |
| rs7317991 | 0.98[ASN][1000 genomes] |
| rs7318002 | 0.98[ASN][1000 genomes] |
| rs7333892 | 0.98[ASN][1000 genomes] |
| rs7337296 | 0.83[ASN][1000 genomes] |
| rs7991022 | 0.81[ASN][1000 genomes] |
| rs9508530 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9508532 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9508533 | 0.98[ASN][1000 genomes] |
| rs9508534 | 0.96[ASN][1000 genomes] |
| rs9508535 | 0.96[ASN][1000 genomes] |
| rs9508536 | 0.94[ASN][1000 genomes] |
| rs9508537 | 0.94[ASN][1000 genomes] |
| rs9508538 | 0.94[ASN][1000 genomes] |
| rs9508539 | 0.81[ASN][1000 genomes] |
| rs9508540 | 0.83[ASN][1000 genomes] |
| rs9508541 | 0.94[ASN][1000 genomes] |
| rs9550489 | 0.94[ASN][1000 genomes] |
| rs9551721 | 0.80[ASN][1000 genomes] |
| rs9551722 | 0.92[ASN][1000 genomes] |
| rs9579471 | 0.91[ASN][1000 genomes] |
| rs9634355 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899961 | chr13:30226924-30407273 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3520592 | chr13:30243601-30648554 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 3 | esv3520593 | chr13:30243601-30648554 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:30262400-30267800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr13:30263400-30266200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr13:30264000-30264800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
