Variant report

Variant	rs2389419
Chromosome Location	chr6:121685992-121685993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17083459	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17083461	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17083463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147710	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2147711	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2182077	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2224948	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389417	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2389418	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2389420	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55930607	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs59205526	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6569202	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs66792513	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67659506	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67862346	0.83[EUR][1000 genomes]
rs68166899	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6917457	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6921692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940718	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7747064	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7747721	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7747777	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7760369	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9320813	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9482146	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9482147	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9482148	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9490195	0.83[EUR][1000 genomes]
rs9490196	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9490199	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490200	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9490201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490203	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9490204	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9490206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490217	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121683800-121686000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:121684000-121686200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:121684800-121686400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:121685400-121688200	Enhancers	Fetal Intestine Small	intestine
5	chr6:121685600-121688200	Enhancers	Fetal Intestine Large	intestine

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