Variant report

Variant	rs9490199
Chromosome Location	chr6:121677165-121677166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17083459	0.85[EUR][1000 genomes]
rs17083461	0.85[EUR][1000 genomes]
rs17083463	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147710	0.82[EUR][1000 genomes]
rs2147711	0.82[EUR][1000 genomes]
rs2182077	0.82[EUR][1000 genomes]
rs2224948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389418	0.82[EUR][1000 genomes]
rs2389419	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389420	0.82[EUR][1000 genomes]
rs55930607	0.85[EUR][1000 genomes]
rs6569202	0.82[EUR][1000 genomes]
rs66792513	0.82[EUR][1000 genomes]
rs67659506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67862346	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs68166899	0.82[EUR][1000 genomes]
rs6917457	0.82[EUR][1000 genomes]
rs6921692	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940718	0.82[EUR][1000 genomes]
rs7747064	0.82[EUR][1000 genomes]
rs7747721	0.82[EUR][1000 genomes]
rs7747777	0.82[EUR][1000 genomes]
rs7760369	0.84[EUR][1000 genomes]
rs9320813	0.82[EUR][1000 genomes]
rs9482146	0.82[EUR][1000 genomes]
rs9482147	0.81[EUR][1000 genomes]
rs9482148	0.82[EUR][1000 genomes]
rs9490195	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9490196	0.84[EUR][1000 genomes]
rs9490200	0.85[EUR][1000 genomes]
rs9490201	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490203	0.82[EUR][1000 genomes]
rs9490204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9490206	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519021	chr6:121671944-121677165	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121677000-121677200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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