Variant report

Variant	rs2389509
Chromosome Location	chr4:118985259-118985260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10020473	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10021128	0.82[ASN][1000 genomes]
rs10024910	1.00[ASN][1000 genomes]
rs10026541	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10027013	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10027893	0.82[ASN][1000 genomes]
rs10033412	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11098421	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098422	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11098424	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11098425	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11722962	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11730541	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11730611	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733562	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11937777	0.84[AMR][1000 genomes]
rs12499751	0.82[ASN][1000 genomes]
rs12505642	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508017	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13104129	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13114621	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13114895	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13125397	0.84[AFR][1000 genomes]
rs13126882	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13127321	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13135646	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13137083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13139875	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1872771	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994384	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2389500	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389501	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389503	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389505	1.00[ASN][1000 genomes]
rs2389506	1.00[ASN][1000 genomes]
rs2389508	1.00[ASN][1000 genomes]
rs2389510	0.82[ASN][1000 genomes]
rs2389511	0.82[ASN][1000 genomes]
rs2389512	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2389515	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2389516	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2389517	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2389518	0.86[AMR][1000 genomes]
rs2389519	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2389520	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2389521	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2389522	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2389524	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2389525	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2389526	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2389527	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2892785	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2892786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892787	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2892788	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2892790	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2892791	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4240313	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240314	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240316	0.84[AMR][1000 genomes]
rs4280816	0.84[AMR][1000 genomes]
rs4437319	0.82[ASN][1000 genomes]
rs4452509	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4558930	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4576085	0.81[AMR][1000 genomes]
rs4616829	0.84[AMR][1000 genomes]
rs4834656	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4834657	0.84[AMR][1000 genomes]
rs6534082	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6816778	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818042	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820061	0.84[AMR][1000 genomes]
rs6820108	0.81[AMR][1000 genomes]
rs7439663	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7655439	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7655519	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7671232	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7671359	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7671434	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7671515	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7671562	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7677274	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7679658	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7681830	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7686670	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7687849	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7688063	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688443	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695706	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9637622	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9637623	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879839	chr4:118967196-119010126	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118979200-118987000	Strong transcription	Dnd41	blood

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