Variant report

Variant	rs239069
Chromosome Location	chr21:17693838-17693839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs13433500	1.00[EUR][1000 genomes]
rs1492951	1.00[EUR][1000 genomes]
rs1492958	1.00[EUR][1000 genomes]
rs1689046	1.00[EUR][1000 genomes]
rs16994578	1.00[EUR][1000 genomes]
rs16994668	1.00[EUR][1000 genomes]
rs16994829	1.00[EUR][1000 genomes]
rs16994966	1.00[EUR][1000 genomes]
rs1786832	1.00[EUR][1000 genomes]
rs1786833	1.00[EUR][1000 genomes]
rs239017	1.00[CHB][hapmap]
rs239068	1.00[CHB][hapmap]
rs239071	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs239073	1.00[CHB][hapmap]
rs239077	1.00[EUR][1000 genomes]
rs2823640	1.00[EUR][1000 genomes]
rs2823645	1.00[EUR][1000 genomes]
rs2823649	1.00[EUR][1000 genomes]
rs2823655	1.00[EUR][1000 genomes]
rs2823656	1.00[EUR][1000 genomes]
rs2823663	1.00[EUR][1000 genomes]
rs2823664	1.00[EUR][1000 genomes]
rs2823665	1.00[EUR][1000 genomes]
rs2823666	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2823667	1.00[EUR][1000 genomes]
rs2823668	1.00[EUR][1000 genomes]
rs2823670	1.00[EUR][1000 genomes]
rs2823673	1.00[EUR][1000 genomes]
rs2823680	1.00[EUR][1000 genomes]
rs2823681	1.00[EUR][1000 genomes]
rs2823686	1.00[EUR][1000 genomes]
rs2823689	1.00[EUR][1000 genomes]
rs2823690	1.00[EUR][1000 genomes]
rs2823691	1.00[EUR][1000 genomes]
rs2823693	1.00[EUR][1000 genomes]
rs2823694	1.00[EUR][1000 genomes]
rs2823698	1.00[EUR][1000 genomes]
rs2823701	1.00[EUR][1000 genomes]
rs2823706	1.00[EUR][1000 genomes]
rs2823714	1.00[EUR][1000 genomes]
rs2823719	1.00[EUR][1000 genomes]
rs2823723	1.00[EUR][1000 genomes]
rs2823724	1.00[EUR][1000 genomes]
rs2823726	1.00[EUR][1000 genomes]
rs2823727	1.00[EUR][1000 genomes]
rs2823728	1.00[EUR][1000 genomes]
rs2823750	1.00[CHB][hapmap]
rs2823753	1.00[CHB][hapmap]
rs28379017	1.00[EUR][1000 genomes]
rs28401314	1.00[EUR][1000 genomes]
rs55909634	1.00[EUR][1000 genomes]
rs55941929	1.00[EUR][1000 genomes]
rs57097865	1.00[EUR][1000 genomes]
rs58869062	1.00[EUR][1000 genomes]
rs59964313	1.00[EUR][1000 genomes]
rs60949090	1.00[EUR][1000 genomes]
rs60963357	1.00[EUR][1000 genomes]
rs61333624	1.00[EUR][1000 genomes]
rs61414956	1.00[EUR][1000 genomes]
rs6517694	1.00[EUR][1000 genomes]
rs7275189	1.00[EUR][1000 genomes]
rs7278407	1.00[EUR][1000 genomes]
rs73357138	1.00[EUR][1000 genomes]
rs73364854	1.00[EUR][1000 genomes]
rs73364899	1.00[EUR][1000 genomes]
rs73364901	1.00[EUR][1000 genomes]
rs73366394	1.00[EUR][1000 genomes]
rs73368220	1.00[EUR][1000 genomes]
rs73368227	1.00[EUR][1000 genomes]
rs8126809	1.00[EUR][1000 genomes]
rs8128157	1.00[EUR][1000 genomes]
rs8131732	1.00[CHB][hapmap]
rs8134616	1.00[EUR][1000 genomes]
rs9975784	1.00[EUR][1000 genomes]
rs9977577	1.00[EUR][1000 genomes]
rs9977984	1.00[EUR][1000 genomes]
rs9981526	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
4	esv2830061	chr21:17667720-17693951	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3450167	chr21:17693708-17693971	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17689400-17700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:17691000-17701000	Weak transcription	Brain Anterior Caudate	brain
3	chr21:17691800-17696600	Weak transcription	Brain Substantia Nigra	brain
4	chr21:17692000-17703000	Weak transcription	Ovary	ovary
5	chr21:17693200-17694400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr21:17693400-17694600	Enhancers	Dnd41	blood
7	chr21:17693600-17694400	Enhancers	Primary T cells from cord blood	blood
8	chr21:17693800-17694400	Weak transcription	A549	lung
9	chr21:17693800-17695000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links