Variant report

Variant	rs2823666
Chromosome Location	chr21:17595671-17595672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs13433500	1.00[EUR][1000 genomes]
rs1492951	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1492958	1.00[EUR][1000 genomes]
rs1689046	1.00[EUR][1000 genomes]
rs16993170	1.00[EUR][1000 genomes]
rs16994578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16994668	1.00[EUR][1000 genomes]
rs16994829	0.80[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16994966	1.00[EUR][1000 genomes]
rs1786832	1.00[EUR][1000 genomes]
rs1786833	1.00[EUR][1000 genomes]
rs239017	1.00[CHB][hapmap]
rs239068	1.00[CHB][hapmap]
rs239069	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs239071	1.00[CHB][hapmap]
rs239073	1.00[CHB][hapmap]
rs239077	1.00[EUR][1000 genomes]
rs2823640	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823645	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823649	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823655	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823656	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823665	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823668	1.00[EUR][1000 genomes]
rs2823670	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823673	1.00[EUR][1000 genomes]
rs2823680	0.87[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823681	1.00[EUR][1000 genomes]
rs2823686	1.00[EUR][1000 genomes]
rs2823689	1.00[EUR][1000 genomes]
rs2823690	1.00[EUR][1000 genomes]
rs2823691	1.00[EUR][1000 genomes]
rs2823693	1.00[EUR][1000 genomes]
rs2823694	1.00[EUR][1000 genomes]
rs2823698	1.00[EUR][1000 genomes]
rs2823701	1.00[EUR][1000 genomes]
rs2823706	1.00[EUR][1000 genomes]
rs2823714	1.00[EUR][1000 genomes]
rs2823719	1.00[EUR][1000 genomes]
rs2823723	1.00[EUR][1000 genomes]
rs2823724	1.00[EUR][1000 genomes]
rs2823726	1.00[EUR][1000 genomes]
rs2823727	1.00[EUR][1000 genomes]
rs2823728	1.00[EUR][1000 genomes]
rs2823750	1.00[CHB][hapmap]
rs2823753	1.00[CHB][hapmap]
rs28379017	1.00[EUR][1000 genomes]
rs28401314	1.00[EUR][1000 genomes]
rs55909634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55941929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57097865	1.00[EUR][1000 genomes]
rs58869062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59964313	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60949090	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60963357	1.00[EUR][1000 genomes]
rs61333624	1.00[EUR][1000 genomes]
rs61414956	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6517694	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7275189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7278407	1.00[EUR][1000 genomes]
rs73357138	1.00[EUR][1000 genomes]
rs73364854	1.00[EUR][1000 genomes]
rs73364899	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73364901	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366394	1.00[EUR][1000 genomes]
rs73366805	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368220	1.00[EUR][1000 genomes]
rs73368227	1.00[EUR][1000 genomes]
rs8126809	1.00[EUR][1000 genomes]
rs8128157	1.00[EUR][1000 genomes]
rs8131732	1.00[CHB][hapmap]
rs8134616	1.00[EUR][1000 genomes]
rs9975784	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977577	1.00[EUR][1000 genomes]
rs9977984	1.00[EUR][1000 genomes]
rs9981526	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17576000-17596800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:17584000-17598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr21:17584400-17596800	Weak transcription	Ovary	ovary
4	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
5	chr21:17584600-17596600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:17584600-17596600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr21:17585000-17612200	Weak transcription	Adipose Nuclei	Adipose
8	chr21:17585400-17604400	Weak transcription	Psoas Muscle	Psoas
9	chr21:17586200-17596600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr21:17586200-17596800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr21:17588600-17596600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr21:17588600-17600600	Weak transcription	Brain Hippocampus Middle	brain
13	chr21:17589000-17597800	Weak transcription	Fetal Kidney	kidney
14	chr21:17589800-17596200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr21:17591200-17598400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr21:17592800-17596800	Weak transcription	Fetal Stomach	stomach
17	chr21:17593000-17596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr21:17593000-17596600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr21:17593000-17596800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr21:17593000-17596800	Weak transcription	Fetal Muscle Leg	muscle
21	chr21:17593000-17599000	Weak transcription	Brain Anterior Caudate	brain
22	chr21:17593800-17596600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr21:17595000-17595800	Enhancers	Brain Angular Gyrus	brain
24	chr21:17595000-17598600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr21:17595200-17596000	Enhancers	Liver	Liver
26	chr21:17595400-17596800	Weak transcription	Aorta	Aorta
27	chr21:17595600-17595800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr21:17595600-17595800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links