Variant report

Variant	rs239076
Chromosome Location	chr21:17593931-17593932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs239079	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17576000-17596800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:17584000-17598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr21:17584400-17596800	Weak transcription	Ovary	ovary
4	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
5	chr21:17584600-17596600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:17584600-17596600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr21:17585000-17595200	Weak transcription	NHDF-Ad	bronchial
8	chr21:17585000-17612200	Weak transcription	Adipose Nuclei	Adipose
9	chr21:17585400-17595000	Weak transcription	Brain Angular Gyrus	brain
10	chr21:17585400-17604400	Weak transcription	Psoas Muscle	Psoas
11	chr21:17586200-17596600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr21:17586200-17596800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr21:17588200-17595000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr21:17588600-17596600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr21:17588600-17600600	Weak transcription	Brain Hippocampus Middle	brain
16	chr21:17588800-17594200	Weak transcription	Dnd41	blood
17	chr21:17588800-17595600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr21:17589000-17594400	Weak transcription	HUVEC	blood vessel
19	chr21:17589000-17597800	Weak transcription	Fetal Kidney	kidney
20	chr21:17589200-17595000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr21:17589800-17596200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr21:17591200-17598400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr21:17592800-17596800	Weak transcription	Fetal Stomach	stomach
24	chr21:17593000-17596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr21:17593000-17596600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr21:17593000-17596800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr21:17593000-17596800	Weak transcription	Fetal Muscle Leg	muscle
28	chr21:17593000-17599000	Weak transcription	Brain Anterior Caudate	brain
29	chr21:17593600-17595200	Weak transcription	Liver	Liver
30	chr21:17593800-17595000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr21:17593800-17596600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links