Variant report

Variant	rs239941
Chromosome Location	chr19:44379644-44379645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs239945	1.00[AFR][1000 genomes]
rs386662	0.83[AFR][1000 genomes]
rs396063	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs400319	1.00[AFR][1000 genomes]
rs408926	0.91[AFR][1000 genomes]
rs420242	0.91[AFR][1000 genomes]
rs431247	0.91[AFR][1000 genomes]
rs432559	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs443524	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs444350	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7254658	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv912108	chr19:44358761-44435167	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv961294	chr19:44359970-44384503	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44371200-44381600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44371200-44381600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44371800-44381400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:44371800-44381600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:44373400-44381600	ZNF genes & repeats	Liver	Liver
6	chr19:44375200-44380000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:44375600-44381600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:44376600-44379800	ZNF genes & repeats	Brain Angular Gyrus	brain
9	chr19:44376600-44379800	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr19:44376600-44379800	ZNF genes & repeats	Psoas Muscle	Psoas
11	chr19:44376800-44379800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
12	chr19:44376800-44381800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:44378000-44380200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr19:44378800-44382600	Weak transcription	Ovary	ovary
15	chr19:44379000-44380800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr19:44379200-44379800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
17	chr19:44379600-44382600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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