Variant report

Variant	rs2399604
Chromosome Location	chr11:92987319-92987320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10741458	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10741460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1446906	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2121466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs615138	1.00[AMR][1000 genomes]
rs6483226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995767	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv975335	chr11:92975294-92989536	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92983800-92989000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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