Variant report

Variant	rs6483226
Chromosome Location	chr11:92865928-92865929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10741458	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10741460	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1446906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2121466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2399604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs615138	1.00[AMR][1000 genomes]
rs995767	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv525304	chr11:92829904-92877533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv435	chr11:92853766-92887893	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92860000-92869600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:92861800-92866800	Weak transcription	NHLF	lung
3	chr11:92862800-92880400	Weak transcription	Aorta	Aorta
4	chr11:92864200-92876400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:92864800-92866800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr11:92865600-92867400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:92865600-92867400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:92865600-92867400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:92865600-92867600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:92865600-92867800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:92865600-92868400	Enhancers	Fetal Lung	lung
12	chr11:92865800-92867000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:92865800-92867600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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