Variant report

Variant	rs2402118
Chromosome Location	chr7:116428573-116428574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116426630..116429182-chr7:116432442..116434146,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10435378	0.92[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs1049618	1.00[YRI][hapmap]
rs16945	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs183642	0.94[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs193688	0.84[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs2023748	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs2237717	0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs2299439	0.92[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs35759345	0.86[TSI][hapmap];0.81[AFR][1000 genomes]
rs38859	0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs41735	0.94[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs41736	0.84[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs41737	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs41738	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs41739	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs41743	1.00[YRI][hapmap]
rs41746	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs41747	1.00[YRI][hapmap]
rs41774	1.00[YRI][hapmap]
rs41775	1.00[YRI][hapmap]
rs42336	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs4730762	1.00[YRI][hapmap]
rs6566	0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs6947629	0.90[AFR][1000 genomes]
rs6951311	1.00[YRI][hapmap]
rs6978135	0.82[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs964449	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116418000-116437600	Weak transcription	Spleen	Spleen
2	chr7:116419600-116429200	Weak transcription	Fetal Brain Male	brain
3	chr7:116421800-116435800	Weak transcription	Aorta	Aorta
4	chr7:116421800-116444000	Weak transcription	Esophagus	oesophagus
5	chr7:116422000-116435800	Weak transcription	Placenta	Placenta
6	chr7:116423000-116428600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:116423000-116431400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:116423000-116439000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:116423000-116442600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:116423200-116430800	Strong transcription	HMEC	breast
11	chr7:116423200-116431000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:116423200-116432200	Strong transcription	NHEK	skin
13	chr7:116423200-116435800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:116423200-116438000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:116423400-116432600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:116423600-116431000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:116424000-116440800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:116424200-116432600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:116424200-116440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:116424200-116445400	Weak transcription	Left Ventricle	heart
21	chr7:116424400-116434400	Weak transcription	Hela-S3	cervix
22	chr7:116424600-116434400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:116424800-116428600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:116425000-116440800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:116425800-116429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:116425800-116435600	Weak transcription	Fetal Stomach	stomach
27	chr7:116426000-116428800	Weak transcription	NH-A	brain
28	chr7:116426200-116440800	Weak transcription	HSMMtube	muscle
29	chr7:116426400-116429800	Enhancers	Liver	Liver
30	chr7:116426400-116434400	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:116427000-116440800	Weak transcription	NHDF-Ad	bronchial
32	chr7:116427200-116428600	Weak transcription	Osteobl	bone
33	chr7:116427200-116429200	Weak transcription	Colonic Mucosa	Colon
34	chr7:116427200-116432600	Strong transcription	A549	lung
35	chr7:116427200-116434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:116427200-116437400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:116427400-116428600	Weak transcription	Psoas Muscle	Psoas
38	chr7:116427400-116429600	Strong transcription	HSMM	muscle
39	chr7:116427400-116432200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:116427400-116433400	Weak transcription	Fetal Intestine Small	intestine
41	chr7:116427400-116434600	Weak transcription	HUVEC	blood vessel
42	chr7:116427400-116440200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:116427400-116445200	Weak transcription	Pancreas	Pancrea
44	chr7:116427600-116428600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:116427600-116435600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:116427800-116435600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:116427800-116435600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr7:116428000-116429200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:116428200-116428800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:116428400-116428600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links