Variant report

Variant	rs41775
Chromosome Location	chr7:116478649-116478650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115861595-115870968..7:116476326-116481047	GM12878	blood:
2	7:115847372-115857098..7:116476326-116481047	GM12878	blood:
3	7:116476326-116481047..7:116754962-116765597	H1-hESC	embryonic stem cell:	embryo
4	7:116476326-116481047..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
5	7:115924626-115929516..7:116476326-116481047	H1-hESC	embryonic stem cell:	embryo
6	7:115929516-115931284..7:116476326-116481047	H1-hESC	embryonic stem cell:	embryo
7	chr7:116477756..116480686-chr7:116482467..116484179,2	MCF-7	breast:
8	7:115890993-115892266..7:116476326-116481047	GM12878	blood:

No data

Variant related genes	Relation type
ENSG00000237870	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000105971	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10435378	1.00[YRI][hapmap]
rs1049618	1.00[YRI][hapmap]
rs11766819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154364	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16945	1.00[YRI][hapmap]
rs183642	1.00[YRI][hapmap]
rs193688	1.00[YRI][hapmap]
rs2023748	1.00[YRI][hapmap]
rs2237717	1.00[YRI][hapmap]
rs2299439	1.00[YRI][hapmap]
rs2402118	1.00[YRI][hapmap]
rs38859	1.00[YRI][hapmap]
rs41735	1.00[YRI][hapmap]
rs41736	1.00[YRI][hapmap]
rs41737	1.00[YRI][hapmap]
rs41738	1.00[YRI][hapmap]
rs41739	1.00[YRI][hapmap]
rs41743	1.00[YRI][hapmap]
rs41746	1.00[YRI][hapmap]
rs41747	1.00[YRI][hapmap]
rs41751	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41752	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41753	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41756	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41757	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41759	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41760	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41761	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41763	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41764	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41765	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41766	0.93[ASN][1000 genomes]
rs41767	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41768	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41769	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41772	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41777	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41780	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41785	0.87[EUR][1000 genomes]
rs41790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41794	0.86[EUR][1000 genomes]
rs42336	1.00[YRI][hapmap]
rs42337	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs42383	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56355906	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6566	1.00[YRI][hapmap]
rs6951311	1.00[YRI][hapmap]
rs6978135	1.00[YRI][hapmap]
rs964449	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116472000-116483400	Weak transcription	Right Atrium	heart
2	chr7:116475600-116481000	Weak transcription	HepG2	liver
3	chr7:116475800-116480600	Strong transcription	Liver	Liver

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