Variant report

No.	Distal block	Cell Line	Cell type
1	7:115861595-115870968..7:116497593-116500954	GM12878	blood:
2	chr7:116492181..116495996-chr7:116498257..116500826,4	MCF-7	breast:
3	7:115890993-115892266..7:116497593-116500954	GM12878	blood:
4	chr7:116495375..116499387-chr7:116500931..116504999,6	K562	blood:
5	7:115847372-115857098..7:116497593-116500954	GM12878	blood:

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000135269	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1049618	0.81[AMR][1000 genomes]
rs11562010	0.82[AMR][1000 genomes]
rs11766819	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41751	0.80[ASN][1000 genomes]
rs41753	0.80[ASN][1000 genomes]
rs41756	0.83[ASN][1000 genomes]
rs41757	0.83[ASN][1000 genomes]
rs41759	0.83[ASN][1000 genomes]
rs41760	0.83[ASN][1000 genomes]
rs41761	0.83[ASN][1000 genomes]
rs41763	0.83[ASN][1000 genomes]
rs41764	0.83[ASN][1000 genomes]
rs41765	0.83[ASN][1000 genomes]
rs41766	0.83[ASN][1000 genomes]
rs41767	0.83[ASN][1000 genomes]
rs41768	0.83[ASN][1000 genomes]
rs41769	0.83[ASN][1000 genomes]
rs41772	0.83[ASN][1000 genomes]
rs41774	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41775	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41777	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41780	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41785	0.83[EUR][1000 genomes]
rs41790	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41794	0.84[EUR][1000 genomes]
rs42337	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs42383	0.83[ASN][1000 genomes]
rs4730762	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56355906	0.80[ASN][1000 genomes]
rs60899920	0.84[AMR][1000 genomes]
rs964449	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116495600-116499000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:116495600-116499200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116495600-116502600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:116495800-116499200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:116495800-116499200	Weak transcription	Osteobl	bone
6	chr7:116495800-116502000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:116495800-116502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:116496400-116502200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:116497200-116502000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:116497400-116502200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:116497800-116502000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:116497800-116502000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:116497800-116502000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:116497800-116502200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:116497800-116502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:116498400-116502200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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