Variant report

Variant	rs41790
Chromosome Location	chr7:116492275-116492276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116492181..116495996-chr7:116498257..116500826,4	MCF-7	breast:
2	7:115847372-115857098..7:116489442-116492712	H1-hESC	embryonic stem cell:	embryo
3	chr17:53195500..53197005-chr7:116492053..116493927,2	K562	blood:
4	7:115890993-115892266..7:116489442-116492712	H1-hESC	embryonic stem cell:	embryo
5	chr7:116490898..116492806-chr7:116495021..116497096,2	K562	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11766819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12154364	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41751	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41752	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs41753	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41756	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41757	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41759	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41760	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41761	0.90[ASN][1000 genomes]
rs41763	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41764	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41765	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41766	0.90[ASN][1000 genomes]
rs41767	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41768	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41769	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41772	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41777	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41785	0.87[EUR][1000 genomes]
rs41794	0.86[EUR][1000 genomes]
rs42337	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs42383	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56355906	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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