Variant report

Variant	rs42337
Chromosome Location	chr7:116472532-116472533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11766819	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154364	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41751	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41752	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41753	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41756	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41757	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41759	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41760	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41761	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41763	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41764	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41765	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41766	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41767	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41768	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41769	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41772	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41774	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41775	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41777	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41780	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41785	0.86[EUR][1000 genomes]
rs41790	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41794	0.85[EUR][1000 genomes]
rs42383	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730762	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56355906	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116467800-116474600	Weak transcription	HepG2	liver
2	chr7:116469600-116474800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:116470400-116473200	Weak transcription	Esophagus	oesophagus
4	chr7:116470400-116474600	Weak transcription	Stomach Mucosa	stomach
5	chr7:116471400-116474600	Weak transcription	Liver	Liver
6	chr7:116472000-116483400	Weak transcription	Right Atrium	heart

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