Variant report
Variant | rs2402730 |
---|---|
Chromosome Location | chr7:124116470-124116471 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:124116352..124119655-chr7:124119768..124122495,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000213296 | TF binding region |
ENSG00000213296 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11761806 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
rs12535227 | 0.89[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs17147167 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2402728 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4523191 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs55915459 | 0.82[AMR][1000 genomes] |
rs61352565 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6651122 | 0.82[AMR][1000 genomes] |
rs7792016 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9641737 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | esv12576 | chr7:124113222-124117647 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | esv10271 | chr7:124115496-124117956 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv970934 | chr7:124116030-124117980 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv471452 | chr7:124116425-124117009 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |