Variant report

Variant	rs6651122
Chromosome Location	chr1:176201999-176202000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12535227	0.84[AMR][1000 genomes]
rs12667105	0.84[ASN][1000 genomes]
rs17147113	0.92[AFR][1000 genomes]
rs17147115	0.92[AFR][1000 genomes]
rs17147134	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17147223	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2107955	0.92[AFR][1000 genomes]
rs2402730	0.82[AMR][1000 genomes]
rs4141224	0.85[AFR][1000 genomes]
rs55915459	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6980467	0.92[AFR][1000 genomes]
rs7792016	0.82[AMR][1000 genomes]
rs9641734	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
2	chr1:176199600-176202200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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