Variant report

Variant	rs2402929
Chromosome Location	chr7:128296052-128296053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35271745	0.98[MKK][hapmap]
rs6967393	0.98[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv970938	chr7:128256300-128300276	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981680	chr7:128288269-128298277	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128239200-128296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:128249600-128297600	Weak transcription	HUVEC	blood vessel
3	chr7:128249600-128308400	Weak transcription	HSMM	muscle
4	chr7:128249600-128312200	Weak transcription	Psoas Muscle	Psoas
5	chr7:128249600-128319600	Weak transcription	NHLF	lung
6	chr7:128260000-128296400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:128260400-128300600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:128272200-128300000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:128274200-128296400	Weak transcription	Colonic Mucosa	Colon
10	chr7:128279600-128296200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:128279800-128296400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:128279800-128300000	Weak transcription	Dnd41	blood
13	chr7:128279800-128301400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:128282400-128301400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:128282400-128312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:128282600-128300000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:128284000-128304800	Weak transcription	Primary T cells from cord blood	blood
18	chr7:128284200-128301400	Weak transcription	Fetal Lung	lung
19	chr7:128284200-128313200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:128284400-128299200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:128284400-128313200	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:128286400-128298400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:128287400-128301400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:128288800-128296200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr7:128289000-128301400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:128291800-128296200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:128292000-128300000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:128292200-128296400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:128292200-128300000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:128293000-128300000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:128293400-128296400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr7:128293400-128300200	Weak transcription	Brain Anterior Caudate	brain
33	chr7:128293600-128296800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:128293600-128296800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr7:128293600-128297800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:128293600-128301400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:128293600-128301600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:128293600-128302000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:128293600-128302200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:128293600-128312200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr7:128294000-128301000	Weak transcription	Esophagus	oesophagus
42	chr7:128294000-128313200	Weak transcription	Brain Germinal Matrix	brain
43	chr7:128294200-128300000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:128294400-128302200	Weak transcription	Aorta	Aorta
45	chr7:128294600-128301400	Weak transcription	Spleen	Spleen
46	chr7:128294600-128301800	Weak transcription	Fetal Brain Female	brain
47	chr7:128294800-128296600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr7:128294800-128297000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:128294800-128298000	Weak transcription	Thymus	Thymus
50	chr7:128294800-128298200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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