Variant report

Variant	rs2402976
Chromosome Location	chr7:129342404-129342405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129342137..129344526-chr7:129344552..129347478,2	K562	blood:
2	chr7:129336428..129340596-chr7:129341128..129344767,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10275661	0.87[YRI][hapmap]
rs10278897	0.87[YRI][hapmap]
rs10954252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538553	0.95[YRI][hapmap]
rs12673568	0.86[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap]
rs13438321	0.91[YRI][hapmap]
rs4469397	0.87[YRI][hapmap]
rs6964297	0.91[YRI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2402976	TMEM86B	trans	cerebellum	SCAN
rs2402976	TSGA14	cis	cerebellum	SCAN
rs2402976	GRM8	cis	parietal	SCAN
rs2402976	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
2	chr7:129307200-129352000	Weak transcription	NHLF	lung
3	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
5	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
7	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
9	chr7:129319000-129347000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
11	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
12	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
13	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
14	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:129332000-129346800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:129332200-129348400	Weak transcription	A549	lung
17	chr7:129332200-129348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:129332200-129349000	Weak transcription	Fetal Lung	lung
19	chr7:129332200-129350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:129332200-129350000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:129332200-129350200	Weak transcription	Esophagus	oesophagus
22	chr7:129332200-129350200	Weak transcription	HUVEC	blood vessel
23	chr7:129332200-129351000	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:129332400-129343000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:129332400-129345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:129332400-129348800	Weak transcription	Aorta	Aorta
27	chr7:129332400-129348800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:129332400-129350200	Weak transcription	Gastric	stomach
29	chr7:129332400-129350200	Weak transcription	Lung	lung
30	chr7:129332400-129351800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:129332600-129347400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:129332600-129349600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:129332600-129350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:129332800-129345400	Weak transcription	Left Ventricle	heart
35	chr7:129332800-129345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:129332800-129347400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:129332800-129347800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:129332800-129348800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:129332800-129348800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:129332800-129348800	Weak transcription	Spleen	Spleen
41	chr7:129332800-129350000	Weak transcription	Brain Angular Gyrus	brain
42	chr7:129332800-129350000	Weak transcription	Brain Anterior Caudate	brain
43	chr7:129332800-129350000	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:129332800-129350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:129332800-129352200	Weak transcription	Right Ventricle	heart
46	chr7:129333000-129347800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr7:129333000-129350000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:129333200-129345400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:129333200-129348600	Weak transcription	GM12878-XiMat	blood
50	chr7:129333400-129350000	Weak transcription	Brain Inferior Temporal Lobe	brain

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