Variant report

Variant	rs10278897
Chromosome Location	chr7:129257849-129257850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129256866..129258455-chr7:129273026..129274955,2	K562	blood:
2	chr7:129217791..129220404-chr7:129255943..129258228,2	MCF-7	breast:
3	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10225103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235960	0.92[ASN][1000 genomes]
rs10267039	0.85[ASW][hapmap];0.81[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs10268267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10271270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276336	0.89[ASN][1000 genomes]
rs10277673	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11763880	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11773536	0.85[JPT][hapmap]
rs12538553	0.93[ASW][hapmap];0.81[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs12666356	0.85[JPT][hapmap]
rs12669389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13438321	0.92[ASW][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap]
rs2007352	0.89[ASN][1000 genomes]
rs2402962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402970	0.85[ASW][hapmap];0.81[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2402976	0.87[YRI][hapmap]
rs28805656	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34300097	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36087637	0.91[ASN][1000 genomes]
rs4469397	1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs4504577	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6949152	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs6962005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964297	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978860	0.85[ASW][hapmap];0.81[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs73721766	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721770	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754386	0.89[ASN][1000 genomes]
rs7783235	0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7787121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790595	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806603	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10278897	KLF14	cis	cerebellum	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:129253200-129262200	Weak transcription	NH-A	brain
14	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
15	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
17	chr7:129253200-129283200	Weak transcription	HSMM	muscle
18	chr7:129253400-129258000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr7:129253400-129258400	Enhancers	Primary B cells from cord blood	blood
20	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
21	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
27	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
29	chr7:129254400-129258200	Enhancers	Brain Angular Gyrus	brain
30	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
32	chr7:129255000-129258000	Enhancers	Dnd41	blood
33	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
34	chr7:129255200-129260200	Enhancers	HepG2	liver
35	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
37	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
39	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
41	chr7:129255800-129258200	Enhancers	K562	blood
42	chr7:129255800-129258400	Enhancers	Fetal Thymus	thymus
43	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:129256200-129258000	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr7:129256200-129258000	Enhancers	Brain Hippocampus Middle	brain
46	chr7:129256400-129258000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:129256400-129258400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr7:129256400-129258400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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