Variant report

Variant	rs10235960
Chromosome Location	chr7:129228229-129228230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129226672..129231038-chr7:129231303..129234307,4	K562	blood:
2	chr7:129225683..129228250-chr7:129235527..129238375,2	MCF-7	breast:
3	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10225103	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10227655	0.92[ASN][1000 genomes]
rs10267039	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs10268267	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10271270	0.92[ASN][1000 genomes]
rs10275661	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.92[ASN][1000 genomes]
rs10276336	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10277673	0.85[JPT][hapmap]
rs10278897	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.92[ASN][1000 genomes]
rs11763880	0.85[JPT][hapmap]
rs11773536	1.00[JPT][hapmap]
rs12538553	0.88[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs12666356	1.00[JPT][hapmap]
rs12669389	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161218	0.85[JPT][hapmap]
rs2007352	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402962	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2402970	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs28805656	0.80[ASN][1000 genomes]
rs34300097	0.80[ASN][1000 genomes]
rs36087637	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4469397	1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs4504577	0.80[ASN][1000 genomes]
rs6962005	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6964297	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6978860	0.85[JPT][hapmap]
rs73721766	0.92[ASN][1000 genomes]
rs73721770	0.92[ASN][1000 genomes]
rs754386	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783235	0.81[ASN][1000 genomes]
rs7787121	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7790595	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129227000-129228800	Enhancers	A549	lung
2	chr7:129227800-129228400	Weak transcription	HepG2	liver
3	chr7:129228200-129228400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:129228200-129231800	Weak transcription	Placenta	Placenta

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