Variant report

Variant	rs10271270
Chromosome Location	chr7:129256427-129256428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr7:129256405-129256663	K562	blood:	n/a	n/a
2	CEBPB	chr7:129256426-129256728	K562	blood:	n/a	chr7:129256584-129256595
3	TEAD4	chr7:129256252-129256827	K562	blood:	n/a	n/a
4	ZNF384	chr7:129256316-129256596	K562	blood:	n/a	n/a
5	WRNIP1	chr7:129256112-129256659	GM12878	blood:	n/a	n/a
6	RCOR1	chr7:129256353-129256808	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129255097..129256981-chr7:129420268..129421887,2	MCF-7	breast:
2	chr7:129255243..129257126-chr7:129262602..129264612,2	MCF-7	breast:
3	chr7:129253872..129256640-chr7:129267800..129269342,2	MCF-7	breast:
4	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:
5	chr7:129217791..129220404-chr7:129255943..129258228,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273329	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10225103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235960	0.92[ASN][1000 genomes]
rs10268267	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10275661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276336	0.89[ASN][1000 genomes]
rs10278897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538553	0.82[EUR][1000 genomes]
rs12669389	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2007352	0.89[ASN][1000 genomes]
rs2402962	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28805656	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34300097	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36087637	0.91[ASN][1000 genomes]
rs4469397	1.00[ASN][1000 genomes]
rs4504577	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962005	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964297	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73721766	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721770	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754386	0.89[ASN][1000 genomes]
rs7783235	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7787121	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790595	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806603	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129257200	Weak transcription	Psoas Muscle	Psoas
8	chr7:129253200-129257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:129253200-129257400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:129253200-129257400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
12	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr7:129253200-129262200	Weak transcription	NH-A	brain
20	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
21	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
23	chr7:129253200-129283200	Weak transcription	HSMM	muscle
24	chr7:129253400-129256600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr7:129253400-129257400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr7:129253400-129257600	Enhancers	A549	lung
27	chr7:129253400-129258000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr7:129253400-129258400	Enhancers	Primary B cells from cord blood	blood
29	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
30	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
36	chr7:129253800-129256600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
39	chr7:129254200-129256600	Weak transcription	Brain Germinal Matrix	brain
40	chr7:129254400-129257000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:129254400-129257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:129254400-129258200	Enhancers	Brain Angular Gyrus	brain
43	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr7:129254600-129256600	Enhancers	HMEC	breast
45	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
46	chr7:129255000-129256600	Weak transcription	NHDF-Ad	bronchial
47	chr7:129255000-129258000	Enhancers	Dnd41	blood
48	chr7:129255200-129256800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:129255200-129256800	Weak transcription	Osteobl	bone
50	chr7:129255200-129257200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links