Variant report

Variant	rs10268267
Chromosome Location	chr7:129280508-129280509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129276808..129280826-chr7:129281308..129284691,4	K562	blood:
2	chr7:129247164..129250870-chr7:129275593..129280578,4	K562	blood:
3	chr7:129278716..129282382-chr7:129282480..129285951,5	MCF-7	breast:
4	chr7:129250405..129253586-chr7:129279749..129286274,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106459	Chromatin interaction
ENSG00000273329	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10225103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10227655	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10235960	0.81[ASN][1000 genomes]
rs10267039	0.81[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10271270	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10275661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10277673	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10278897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11763880	0.81[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11773536	0.85[JPT][hapmap]
rs12538553	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12666356	0.85[JPT][hapmap]
rs12669389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13438321	0.89[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap]
rs2402962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2402970	0.81[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs28805656	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34300097	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4469397	1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4504577	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6949152	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs6962005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978860	0.81[CEU][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs73721766	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73721770	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7783235	0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790595	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7806603	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10268267	KLF14	cis	cerebellum	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129283200	Weak transcription	HSMM	muscle
4	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
5	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
6	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
7	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:129256600-129284400	Weak transcription	HMEC	breast
9	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
10	chr7:129257600-129282800	Weak transcription	Osteobl	bone
11	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:129257800-129289000	Weak transcription	NHEK	skin
13	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
15	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
16	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
17	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
20	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:129267200-129282600	Weak transcription	Primary B cells from cord blood	blood
23	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:129270000-129282600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:129270200-129282600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:129270200-129282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:129270400-129285000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:129270600-129282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:129271000-129293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:129274800-129282800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:129275200-129283200	Weak transcription	Dnd41	blood
34	chr7:129275400-129282600	Weak transcription	Brain Angular Gyrus	brain
35	chr7:129275400-129282800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:129275400-129282800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:129275400-129283000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr7:129275600-129282600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr7:129275600-129283000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:129275600-129283600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:129275600-129297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:129275600-129297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:129275600-129297200	Weak transcription	HepG2	liver
44	chr7:129275800-129283200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:129275800-129283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:129275800-129289000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:129276000-129280600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:129276000-129282600	Weak transcription	Brain Anterior Caudate	brain
49	chr7:129276000-129282600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:129276000-129282600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links