Variant report

Variant	rs12666356
Chromosome Location	chr7:129302369-129302370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129301627..129303933-chr7:129464656..129467241,2	K562	blood:
2	chr7:129300901..129303855-chr7:129648023..129650206,2	K562	blood:

Variant related genes	Relation type
ENSG00000244036	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225103	0.85[JPT][hapmap]
rs10267039	0.85[JPT][hapmap]
rs10268267	0.85[JPT][hapmap]
rs10275661	0.85[JPT][hapmap]
rs10277673	0.85[JPT][hapmap]
rs10278897	0.85[JPT][hapmap]
rs11763880	0.85[JPT][hapmap]
rs11766629	1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11773536	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12538553	0.85[JPT][hapmap]
rs12669389	0.85[JPT][hapmap]
rs12674329	0.81[ASN][1000 genomes]
rs17161218	0.85[JPT][hapmap];0.94[YRI][hapmap];0.88[EUR][1000 genomes]
rs17161487	1.00[CHD][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap]
rs2402962	0.85[JPT][hapmap]
rs2402970	0.85[JPT][hapmap]
rs35813096	0.96[EUR][1000 genomes]
rs4469397	0.85[JPT][hapmap]
rs6962005	0.85[JPT][hapmap]
rs6964297	0.85[JPT][hapmap]
rs6978860	0.85[JPT][hapmap]
rs7787121	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3477492	chr7:129298416-129304014	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3359315	chr7:129298866-129303114	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3395322	chr7:129299366-129303064	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500340	chr7:129299408-129302495	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129286800-129304400	Weak transcription	NHLF	lung
3	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
4	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
5	chr7:129290400-129304600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:129293800-129311200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:129293800-129311400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:129297200-129302400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:129297200-129302600	ZNF genes & repeats	Dnd41	blood
10	chr7:129297200-129303200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:129297600-129302600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
13	chr7:129298000-129304400	Weak transcription	NHDF-Ad	bronchial
14	chr7:129298200-129302600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr7:129298600-129309800	Weak transcription	Fetal Heart	heart
16	chr7:129299000-129303400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
17	chr7:129299200-129302400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:129299200-129302400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr7:129299200-129302600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:129299400-129302400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
21	chr7:129299400-129302400	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr7:129299400-129302400	ZNF genes & repeats	GM12878-XiMat	blood
23	chr7:129299400-129302600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr7:129299400-129302600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:129299400-129302600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr7:129299800-129302600	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr7:129299800-129304400	Weak transcription	NH-A	brain
28	chr7:129299800-129304400	Weak transcription	NHEK	skin
29	chr7:129299800-129311400	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:129300000-129304600	Weak transcription	Hela-S3	cervix
31	chr7:129300000-129314000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr7:129300400-129303400	Strong transcription	Colonic Mucosa	Colon
33	chr7:129300600-129311800	Weak transcription	Pancreas	Pancrea
34	chr7:129301000-129302400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr7:129301000-129304400	Weak transcription	Osteobl	bone
36	chr7:129301000-129330200	Weak transcription	Gastric	stomach
37	chr7:129301200-129311200	Weak transcription	Right Ventricle	heart
38	chr7:129301200-129312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:129301400-129302400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:129301800-129302400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr7:129301800-129311800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:129302000-129302600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr7:129302000-129302600	Strong transcription	Fetal Thymus	thymus
44	chr7:129302000-129303200	Weak transcription	Lung	lung
45	chr7:129302000-129303400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:129302000-129304000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr7:129302000-129304000	Weak transcription	Fetal Brain Female	brain
48	chr7:129302000-129304200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:129302000-129304200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:129302000-129304200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links