Variant report

Variant	rs7790595
Chromosome Location	chr7:129269836-129269837
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:129269765-129269981	GM12891	blood:	n/a	n/a
2	POLR2A	chr7:129269669-129269943	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129250084..129252552-chr7:129268663..129271453,3	MCF-7	breast:

Variant related genes	Relation type
NRF1	TF binding region
ENSG00000273329	Chromatin interaction
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10225103	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227655	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235960	0.92[ASN][1000 genomes]
rs10267039	0.81[EUR][1000 genomes]
rs10268267	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10271270	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275661	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276336	0.89[ASN][1000 genomes]
rs10277673	0.81[EUR][1000 genomes]
rs10278897	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538553	0.87[EUR][1000 genomes]
rs12669389	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2007352	0.89[ASN][1000 genomes]
rs2402962	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402970	0.81[EUR][1000 genomes]
rs28805656	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34300097	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36087637	0.91[ASN][1000 genomes]
rs4469397	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4504577	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962005	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964297	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978860	0.81[EUR][1000 genomes]
rs73721766	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721770	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754386	0.89[ASN][1000 genomes]
rs7783235	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7787121	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806603	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
4	chr7:129253200-129283200	Weak transcription	HSMM	muscle
5	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
8	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
9	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
11	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
12	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:129256600-129284400	Weak transcription	HMEC	breast
15	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
16	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:129257600-129282800	Weak transcription	Osteobl	bone
18	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
20	chr7:129257800-129289000	Weak transcription	NHEK	skin
21	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
23	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
24	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
26	chr7:129258600-129271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:129260200-129273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
31	chr7:129260400-129274600	Weak transcription	Liver	Liver
32	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:129263200-129272600	Weak transcription	Primary T cells from cord blood	blood
34	chr7:129263600-129275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:129265000-129275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:129265200-129274600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:129266000-129270200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr7:129267000-129275200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:129267200-129270000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr7:129267200-129271400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr7:129267200-129278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:129267200-129282600	Weak transcription	Primary B cells from cord blood	blood
44	chr7:129267400-129275200	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:129267400-129278200	Weak transcription	Psoas Muscle	Psoas
46	chr7:129267600-129274800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:129267800-129270000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:129267800-129275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:129268800-129270400	Enhancers	HUES48 Cell Line	embryonic stem cell

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