Variant report

Variant	rs2403199
Chromosome Location	chr14:104062068-104062069
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104056281..104057998-chr14:104062003..104064043,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10149773	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1103184	0.84[ASN][1000 genomes]
rs11160757	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs12891411	0.84[ASN][1000 genomes]
rs1998775	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2296485	1.00[JPT][hapmap]
rs2403198	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742359	0.84[ASN][1000 genomes]
rs4243740	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4526964	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4900585	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4906351	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4906353	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4906354	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4906357	0.82[ASW][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs861532	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs861540	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[ASN][1000 genomes]
rs861542	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs861546	0.84[ASN][1000 genomes]
rs861549	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs861550	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1052010	chr14:104061472-104216267	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542201	chr14:104061472-104216267	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv456435	chr14:104061646-104198251	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
9	nsv566023	chr14:104061646-104198251	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
2	chr14:104041000-104063200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:104045600-104067200	Weak transcription	Primary B cells from cord blood	blood
4	chr14:104045800-104064200	Weak transcription	Hela-S3	cervix
5	chr14:104055800-104067000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:104055800-104073000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:104056800-104064000	Weak transcription	A549	lung
8	chr14:104057000-104070800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:104057600-104063600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:104057600-104063800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:104057600-104064000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:104057600-104064200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:104057600-104064200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:104057600-104064400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:104057600-104073400	Weak transcription	Primary T cells from cord blood	blood
16	chr14:104057800-104062400	Weak transcription	Aorta	Aorta
17	chr14:104057800-104063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:104057800-104064200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr14:104057800-104064200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:104057800-104064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:104057800-104064200	Weak transcription	Osteobl	bone
22	chr14:104057800-104073200	Weak transcription	Fetal Intestine Large	intestine
23	chr14:104057800-104073200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:104057800-104073400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:104057800-104073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:104058000-104073400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:104059400-104062200	Enhancers	HMEC	breast
28	chr14:104059600-104062200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:104059600-104062400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr14:104059600-104062800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:104059800-104062600	Enhancers	NH-A	brain
32	chr14:104060000-104065000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:104060200-104062200	Enhancers	Stomach Mucosa	stomach
34	chr14:104060200-104062800	Enhancers	Fetal Muscle Trunk	muscle
35	chr14:104060200-104090200	Weak transcription	Pancreas	Pancrea
36	chr14:104060400-104062200	Enhancers	Brain Germinal Matrix	brain
37	chr14:104060400-104062200	Enhancers	HSMM	muscle
38	chr14:104060400-104062400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:104060400-104062400	Enhancers	Fetal Brain Male	brain
40	chr14:104060400-104062600	Enhancers	Placenta	Placenta
41	chr14:104060400-104062800	Enhancers	Fetal Brain Female	brain
42	chr14:104060400-104065200	Strong transcription	Fetal Intestine Small	intestine
43	chr14:104060400-104071200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:104060800-104064200	Weak transcription	Spleen	Spleen
45	chr14:104060800-104073400	Weak transcription	Lung	lung
46	chr14:104061000-104062200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:104061000-104062200	Enhancers	Brain Angular Gyrus	brain
48	chr14:104061000-104062200	Enhancers	Fetal Stomach	stomach
49	chr14:104061000-104062800	Enhancers	Fetal Muscle Leg	muscle
50	chr14:104061000-104063800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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