Variant report

Variant	rs4906354
Chromosome Location	chr14:104127343-104127344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104116587..104120491-chr14:104126433..104129396,3	K562	blood:
2	chr14:104093982..104097724-chr14:104126716..104132803,8	MCF-7	breast:
3	chr14:104126012..104128033-chr14:104180786..104183027,2	MCF-7	breast:
4	chr14:104091966..104093506-chr14:104127294..104130237,2	MCF-7	breast:
5	chr14:104126094..104128424-chr14:104132869..104136068,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126215	Chromatin interaction
ENSG00000100711	Chromatin interaction
ENSG00000126214	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10149773	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1103184	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11160757	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629327	0.80[AMR][1000 genomes]
rs12891411	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998775	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296485	1.00[JPT][hapmap]
rs2403198	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2403199	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3742359	1.00[ASN][1000 genomes]
rs4243740	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4526964	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4906351	1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4906353	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4906357	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861532	1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861540	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs861542	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs861543	0.86[AMR][1000 genomes]
rs861546	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861549	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861550	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1052010	chr14:104061472-104216267	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv542201	chr14:104061472-104216267	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv456435	chr14:104061646-104198251	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv566023	chr14:104061646-104198251	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv902308	chr14:104087209-104211180	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv1041329	chr14:104097750-104196346	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv542202	chr14:104097750-104196346	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1048866	chr14:104100862-104195896	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv542203	chr14:104113463-104143782	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104097400-104156600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:104108000-104130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:104110800-104130000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:104117800-104129800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:104117800-104157000	Strong transcription	Dnd41	blood
6	chr14:104117800-104176000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:104118800-104175600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:104119000-104132200	Strong transcription	Primary T cells from cord blood	blood
9	chr14:104119200-104131000	Strong transcription	NHEK	skin
10	chr14:104119200-104145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:104119200-104155600	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:104119200-104173000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:104119400-104130600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:104119400-104145000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:104119400-104147800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:104119400-104157000	Strong transcription	Fetal Thymus	thymus
17	chr14:104119400-104161800	Strong transcription	Fetal Intestine Small	intestine
18	chr14:104119400-104164600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr14:104119400-104175200	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:104119600-104128800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr14:104119800-104127400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:104119800-104128400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:104119800-104128800	Strong transcription	K562	blood
24	chr14:104120000-104131800	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr14:104120000-104145600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:104120000-104177000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:104120200-104132400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:104120200-104149800	Strong transcription	Fetal Muscle Leg	muscle
29	chr14:104120200-104155000	Strong transcription	Fetal Brain Female	brain
30	chr14:104120200-104161400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:104120200-104161800	Strong transcription	Fetal Intestine Large	intestine
32	chr14:104120400-104130400	Strong transcription	Esophagus	oesophagus
33	chr14:104120400-104131800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:104120400-104134800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:104120400-104150000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr14:104120400-104157000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:104120400-104157000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:104120400-104161200	Strong transcription	Fetal Stomach	stomach
39	chr14:104120600-104129000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:104120600-104143200	Strong transcription	Left Ventricle	heart
41	chr14:104120600-104155000	Strong transcription	Brain Germinal Matrix	brain
42	chr14:104120800-104130800	Strong transcription	HepG2	liver
43	chr14:104120800-104131800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:104120800-104131800	Strong transcription	Fetal Lung	lung
45	chr14:104120800-104132200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:104120800-104132600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:104120800-104157200	Strong transcription	Thymus	Thymus
48	chr14:104121000-104131800	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr14:104121000-104154200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:104121000-104154800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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