Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46413405..46416339-chr12:46416939..46419427,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10161306	0.85[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs1062905	0.91[JPT][hapmap]
rs10880873	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10880874	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs10880883	0.82[ASN][1000 genomes]
rs11183217	0.81[JPT][hapmap]
rs11183226	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs11183229	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs11183234	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs11183251	0.85[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs11183272	0.81[JPT][hapmap]
rs11183273	0.85[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs11183275	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11183298	0.88[ASN][1000 genomes]
rs11514434	0.91[ASN][1000 genomes]
rs11574964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1427750	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1896539	0.85[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2408437	0.91[JPT][hapmap]
rs4144983	0.80[ASN][1000 genomes]
rs4768099	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4768667	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4768673	0.82[ASN][1000 genomes]
rs4768674	0.91[ASN][1000 genomes]
rs4768675	0.91[ASN][1000 genomes]
rs735351	0.85[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46414800-46415800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:46414800-46416000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:46415200-46415600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:46415400-46416400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: