Variant report
| Variant | rs4768675 |
|---|---|
| Chromosome Location | chr12:46412095-46412096 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:46410714..46413083-chr12:46416525..46418084,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10161306 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1062905 | 0.83[ASN][1000 genomes] |
| rs10880873 | 0.82[ASN][1000 genomes] |
| rs10880874 | 0.82[ASN][1000 genomes] |
| rs10880883 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11183234 | 0.80[ASN][1000 genomes] |
| rs11183251 | 0.83[ASN][1000 genomes] |
| rs11183273 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11183275 | 0.84[EUR][1000 genomes] |
| rs11183298 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11514434 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12318248 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1427750 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17096361 | 0.83[ASN][1000 genomes] |
| rs1896539 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2408462 | 0.91[ASN][1000 genomes] |
| rs4144983 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4768100 | 0.82[ASN][1000 genomes] |
| rs4768670 | 0.83[ASN][1000 genomes] |
| rs4768672 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4768673 | 0.84[EUR][1000 genomes] |
| rs4768674 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61924070 | 0.83[ASN][1000 genomes] |
| rs67136007 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7308284 | 0.81[AFR][1000 genomes] |
| rs735351 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832397 | chr12:46265990-46453733 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:46412000-46413000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
