Variant report

Variant	rs2408504
Chromosome Location	chr12:46717598-46717599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46715775..46718180-chr12:46720691..46722273,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10467213	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1079780	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880947	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10880953	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10880959	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10880960	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10880961	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10880966	0.85[AMR][1000 genomes]
rs11183420	0.83[EUR][1000 genomes]
rs11183441	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1125909	0.81[AMR][1000 genomes]
rs11504511	0.86[EUR][1000 genomes]
rs12099669	0.81[AMR][1000 genomes]
rs12298619	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12302984	0.87[EUR][1000 genomes]
rs12310125	0.88[EUR][1000 genomes]
rs12311507	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12317787	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12580583	0.89[EUR][1000 genomes]
rs12816358	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12816413	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1471223	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1492892	0.88[EUR][1000 genomes]
rs1492894	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1492895	0.80[AMR][1000 genomes]
rs1586905	0.82[EUR][1000 genomes]
rs2018424	0.88[EUR][1000 genomes]
rs2087834	0.87[EUR][1000 genomes]
rs2169030	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2172398	0.87[EUR][1000 genomes]
rs2242355	0.83[EUR][1000 genomes]
rs2307061	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2408497	0.83[AMR][1000 genomes]
rs2408505	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2408506	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2408507	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2408508	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2897951	0.80[AMR][1000 genomes]
rs2897968	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34119192	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35123676	0.87[EUR][1000 genomes]
rs35497251	0.88[EUR][1000 genomes]
rs3782904	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4238102	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4258438	0.80[AMR][1000 genomes]
rs4438106	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4547171	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4586238	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4768110	0.84[EUR][1000 genomes]
rs4768111	0.89[EUR][1000 genomes]
rs4768113	0.86[EUR][1000 genomes]
rs4768115	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768116	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768118	0.81[AMR][1000 genomes]
rs4768119	0.80[AMR][1000 genomes]
rs4768694	0.87[EUR][1000 genomes]
rs4768695	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768696	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768698	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768709	0.80[AMR][1000 genomes]
rs4768710	0.80[AMR][1000 genomes]
rs59919892	0.88[EUR][1000 genomes]
rs6582625	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132228	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7134855	0.89[EUR][1000 genomes]
rs7297536	0.84[EUR][1000 genomes]
rs7310869	0.87[EUR][1000 genomes]
rs7314069	0.89[EUR][1000 genomes]
rs7315493	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7316127	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7316773	0.87[EUR][1000 genomes]
rs7953659	0.88[EUR][1000 genomes]
rs7958774	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960147	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7961994	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7965629	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7966288	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7967669	0.88[EUR][1000 genomes]
rs7968173	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7968283	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7970911	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7974529	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7976280	0.83[AMR][1000 genomes]
rs7976362	0.89[EUR][1000 genomes]
rs7979418	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7979514	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7980775	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898242	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs956910	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9669051	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9669381	0.87[EUR][1000 genomes]
rs9795971	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9971879	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832398	chr12:46611692-46825530	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	esv1842882	chr12:46691487-47009428	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
3	nsv521192	chr12:46709251-46720819	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46708800-46736200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:46716400-46717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links