Variant report

Variant	rs4768110
Chromosome Location	chr12:46677461-46677462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46661457..46664197-chr12:46677249..46679323,2	K562	blood:

Variant related genes	Relation type
ENSG00000111371	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10467213	0.83[EUR][1000 genomes]
rs1060735	0.81[EUR][1000 genomes]
rs10880947	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10880953	0.84[EUR][1000 genomes]
rs11183420	0.89[EUR][1000 genomes]
rs11183441	0.84[EUR][1000 genomes]
rs11504511	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12298619	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12302984	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12310125	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12311507	0.84[EUR][1000 genomes]
rs12580583	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12816413	0.84[EUR][1000 genomes]
rs1492892	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1586905	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2018424	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2087834	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172398	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242355	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279560	0.81[EUR][1000 genomes]
rs2408504	0.84[EUR][1000 genomes]
rs2408505	0.85[EUR][1000 genomes]
rs2408506	0.80[EUR][1000 genomes]
rs34119192	0.85[EUR][1000 genomes]
rs35123676	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35497251	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4238102	0.82[EUR][1000 genomes]
rs4438106	0.85[EUR][1000 genomes]
rs4586238	0.83[EUR][1000 genomes]
rs4768111	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768113	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768695	0.84[EUR][1000 genomes]
rs4768696	0.82[EUR][1000 genomes]
rs59919892	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6582625	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7134855	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7297536	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7310869	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314069	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7315493	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7316127	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7316773	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7953659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7958774	0.83[EUR][1000 genomes]
rs7965629	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7966288	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7967669	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7970911	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7976362	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7979514	0.84[EUR][1000 genomes]
rs7980775	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898242	0.84[EUR][1000 genomes]
rs9795971	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832398	chr12:46611692-46825530	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46677200-46677800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:46677200-46677800	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr12:46677200-46677800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr12:46677400-46677800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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