Variant report

Variant	rs2411304
Chromosome Location	chr15:39966279-39966280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39913171..39923947-chr15:39954798..39966806,32	MCF-7	breast:
2	chr15:39961034..39963192-chr15:39965564..39967491,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11631820	0.83[ASN][1000 genomes]
rs11631824	0.83[ASN][1000 genomes]
rs12050804	0.83[ASN][1000 genomes]
rs12900583	0.83[ASN][1000 genomes]
rs12911999	0.81[ASN][1000 genomes]
rs1906152	0.80[ASN][1000 genomes]
rs1906156	0.82[ASN][1000 genomes]
rs2411300	0.84[ASN][1000 genomes]
rs2411301	0.86[ASN][1000 genomes]
rs2411307	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2411310	0.83[ASN][1000 genomes]
rs2631697	0.82[ASN][1000 genomes]
rs2631702	0.81[ASN][1000 genomes]
rs2631704	0.82[ASN][1000 genomes]
rs2631705	0.82[ASN][1000 genomes]
rs2631710	0.82[ASN][1000 genomes]
rs2664125	0.82[ASN][1000 genomes]
rs28581473	0.82[ASN][1000 genomes]
rs4319738	0.83[ASN][1000 genomes]
rs4429263	0.84[ASN][1000 genomes]
rs4476148	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4493017	0.83[ASN][1000 genomes]
rs4505280	0.83[ASN][1000 genomes]
rs4591113	0.84[ASN][1000 genomes]
rs4924376	0.84[ASN][1000 genomes]
rs4924377	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6492910	0.84[ASN][1000 genomes]
rs6492911	0.82[ASN][1000 genomes]
rs8034543	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8035354	0.82[ASN][1000 genomes]
rs937960	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39960200-39972600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:39964600-39972600	Weak transcription	HSMMtube	muscle
3	chr15:39964600-39974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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