Variant report

Variant	rs2631704
Chromosome Location	chr15:40000405-40000406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1105159	0.87[ASN][1000 genomes]
rs11070231	0.96[ASN][1000 genomes]
rs11631820	0.92[ASN][1000 genomes]
rs11631824	0.92[ASN][1000 genomes]
rs12050804	0.92[ASN][1000 genomes]
rs12899323	0.86[ASN][1000 genomes]
rs12900024	0.82[ASN][1000 genomes]
rs12900583	0.92[ASN][1000 genomes]
rs12901142	0.87[ASN][1000 genomes]
rs12903514	0.87[ASN][1000 genomes]
rs12911549	0.87[ASN][1000 genomes]
rs12911999	0.97[ASN][1000 genomes]
rs1906152	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1906155	0.94[ASN][1000 genomes]
rs1906156	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129459	0.94[ASN][1000 genomes]
rs2411299	0.88[ASN][1000 genomes]
rs2411300	0.94[ASN][1000 genomes]
rs2411301	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2411304	0.82[ASN][1000 genomes]
rs2411307	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2411308	0.87[ASN][1000 genomes]
rs2411309	0.87[ASN][1000 genomes]
rs2411310	0.92[ASN][1000 genomes]
rs2411311	0.87[ASN][1000 genomes]
rs2631697	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631700	0.94[ASN][1000 genomes]
rs2631701	0.95[ASN][1000 genomes]
rs2631702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631710	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2664125	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2664133	0.95[ASN][1000 genomes]
rs2664135	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28437905	0.87[ASN][1000 genomes]
rs28581473	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2898685	0.87[ASN][1000 genomes]
rs4319738	0.92[ASN][1000 genomes]
rs4429263	0.99[ASN][1000 genomes]
rs4476148	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4480779	0.87[ASN][1000 genomes]
rs4493017	0.92[ASN][1000 genomes]
rs4505280	0.92[ASN][1000 genomes]
rs4572354	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4591113	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4606692	0.87[ASN][1000 genomes]
rs4924376	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924377	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6492909	0.87[ASN][1000 genomes]
rs6492910	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6492911	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs68183224	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167100	0.87[ASN][1000 genomes]
rs7177857	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7179013	0.80[ASN][1000 genomes]
rs8033902	0.87[ASN][1000 genomes]
rs8034543	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8034885	0.86[ASN][1000 genomes]
rs8035354	0.91[ASN][1000 genomes]
rs8036226	0.87[ASN][1000 genomes]
rs8042068	0.88[ASN][1000 genomes]
rs937960	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951358	0.94[ASN][1000 genomes]
rs9672572	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39997000-40001800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:39997400-40000800	Weak transcription	NHDF-Ad	bronchial
3	chr15:39997600-40000800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:39997600-40002400	Weak transcription	Osteobl	bone
5	chr15:39999800-40004400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:40000200-40005400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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